Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2599 ATGGCCGCTCAATCTCCTGCAAATGAAAGCATGTGCTGTGATTTGGAGCTGTTAAAGCTACCACCTTCTCCAGCAATATCTTTAATTTTGTCTGGTACTACTCTACCTCGAAACGGAAAGATGAATCGCTTGACTGTGGAAACTGAAGATAGTTTTGCAAGCCTGCTTGACCTTGCAGCCAATAATGACGTTGAGCATTTCAAAAGATCAATTGAACGTGATCCTTCCTCTGTAGATGAGGTTGGACTGTGGTATGGTCGTCAGAAGGGATCAAAGCAGATGGTCAACGAGCACCGGACGCCATTGATGGTTGCTGCTACTTATGGCAGTATCGATGTCATCAAGTTGATTCTTTCATCATCTGATGCAGATATTAATCGATCATGTGGGCTTGACAAAAGCACGGCCCTTCATTGCGCTGCATCAGGTGGGGCTGTAAATGCTGTTGATGTGGTGAAACTGCTTCTGGCAGCCGGTGCCGATCCGAATTCTGTCGATGCCAATGGTCACTATCCTGTTGATGTCATTGTGGTGCCTCCCAAGCTTGCCCATGTGAAGAGTATTCTTGAAGAACTTCTTCAAACAGATTGTTCCATGGCAGGCTGTGGTCTTAGGGTGGTAACAGCTACATCTAATTCAAACTCTCCCCCTCCATCAACTTCTCCAGAGAATGGGTCTCCTTCTACACTAGAGTTCCATCTGAAGCTGAAGTTAAGGGACACGGCTGGTTTATCTGGATCAGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCTGACATCAAAAACAGCATCTACTCGACTGACGAGTTCAGGATGTATTCTTTCAAGGTTCGACCATGTTCGCGTGCATATTCACATGATTGGACTGAATGCCCTTTCGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCGAGGAAGTTTCATTATAGCTGTGTCCCTTGTCCTGATTTCCGAAAAGGAGCTTGCCGTCGAGGAGACATGTGTGAATATGCCCATGGTGTTTTTGAGTGCTGGCTGCATCCAGCTCAATATCGAACCCGCCTCTGCAAGGATGGGACCAGTTGTTCAAGAAGAGTTTGCTTCTTTGCCCATACAGCTGAGGAACTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTTCCATCACCACGCTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCCTGTTACCTGGTTCCCCTTCTTCAATGTCTGTGATGTCTCCATCACCGTTCACTCCACCCATGTCACCGTCTGCCACCGGCATGTCACACTCCTCTGTGGCTTGGCCACAACCTAATGTTCCTAACCTGCATCTGCCAGGAAGTAATATTCACTCTAGTCGATTGAGATCTTCATTCAGTGCCAGAGATATCCCTGTGGACGACTTTGATCTGTTGCCTGACTATGATGTTCAGCAGCACCAGCTACTTAGCGAGATGTCTTGCCTTTCCCAGCAATCTATGAATTCTAATAACCTAAACCGCTCTGGTCGCATTAAGACCTTGACCCCTTCAAACCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCTCGGTTTGCTGATCCGACGTTGAGTTCAGCTGTCTTTTCGCCCACACACAAATCAGCCGTCCTCAATCAATTTCAGCAGCAGCAAAGCTTGCTTTCACCTGTGAATACAAACTTTTCTTCGAAGAATGTTGAACATCCTTTGTTACAGGCCTCGTTCCAGACGTCAGGAAGGATGTCTCCACGTAATGTGGAACCTATTTCACCAATGAGCTCCAGGCTTTCTGTGCTAGCTCAACGCGAAAAGCAGCACCAGTTTCGTAGCCTCAGCTCTCGGGATCTTGGCTCCAACTCCGCCACCGCTGTTGCTGCCGGTTTTAACGACAGTTCTTGGTCAGAATGGGGATCCGCCAATGGTAAACTGGATTGGGCTGTCAATGCTGATGATTTGGGCAAGCTCCGCAGATCGTCGTCGTTTGAATTTGGGAGCAACGGCGAGGAGCCTGATCTGTCATGGGTCCAGTCGCTTGTGAAAGAAACTCCAACTGACAAGGAGAAACTGGGAATGGCTGTCTCAAGTGTTGCAGCGGCTGTATACTCTAGCGAGGGATCGAATTTGAGCACTCAAATTTGA 2142 0.4781 MAAQSPANESMCCDLELLKLPPSPAISLILSGTTLPRNGKMNRLTVETEDSFASLLDLAANNDVEHFKRSIERDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSSSDADINRSCGLDKSTALHCAASGGAVNAVDVVKLLLAAGADPNSVDANGHYPVDVIVVPPKLAHVKSILEELLQTDCSMAGCGLRVVTATSNSNSPPPSTSPENGSPSTLEFHLKLKLRDTAGLSGSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSATGMSHSSVAWPQPNVPNLHLPGSNIHSSRLRSSFSARDIPVDDFDLLPDYDVQQHQLLSEMSCLSQQSMNSNNLNRSGRIKTLTPSNLDDLFSAESSSPRFADPTLSSAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSSKNVEHPLLQASFQTSGRMSPRNVEPISPMSSRLSVLAQREKQHQFRSLSSRDLGSNSATAVAAGFNDSSWSEWGSANGKLDWAVNADDLGKLRRSSSFEFGSNGEEPDLSWVQSLVKETPTEXKEKLGMAVSSVAAAVYSSEGSNLSTQI 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2599 714 PANTHER UNKEMPT FAMILY MEMBER 57 683 IPR045234 -
Prci3g2599 714 Gene3D - 311 373 - -
Prci3g2599 714 PRINTS Ankyrin repeat signature 151 165 IPR002110 GO:0005515
Prci3g2599 714 PRINTS Ankyrin repeat signature 98 113 IPR002110 GO:0005515
Prci3g2599 714 SUPERFAMILY Ankyrin repeat 56 178 IPR036770 -
Prci3g2599 714 SMART ANK_2a 132 164 IPR002110 GO:0005515
Prci3g2599 714 SMART ANK_2a 97 127 IPR002110 GO:0005515
Prci3g2599 714 MobiDBLite consensus disorder prediction 208 228 - -
Prci3g2599 714 ProSiteProfiles Ankyrin repeat region circular profile. 132 166 - -
Prci3g2599 714 Gene3D - 48 198 IPR036770 -
Prci3g2599 714 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 335 IPR000571 GO:0046872
Prci3g2599 714 FunFam Zinc finger CCCH domain-containing protein 66 268 336 - -
Prci3g2599 714 SMART c3hfinal6 345 368 IPR000571 GO:0046872
Prci3g2599 714 SMART c3hfinal6 310 336 IPR000571 GO:0046872
Prci3g2599 714 ProSiteProfiles Ankyrin repeat profile. 132 167 IPR002110 GO:0005515
Prci3g2599 714 MobiDBLite consensus disorder prediction 411 435 - -
Prci3g2599 714 MobiDBLite consensus disorder prediction 208 230 - -
Prci3g2599 714 ProSiteProfiles Zinc finger C3H1-type profile. 315 337 IPR000571 GO:0046872
Prci3g2599 714 Pfam Ankyrin repeats (3 copies) 93 166 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2599 Prci-Chr3 38702566 38707066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2599 46 683 C2H2 Transcription Factor Family AT5G12850 55.521 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci3g2599 Ank_2 3.1e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2599 - - ccaj:109796653 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2599 3 38702566 38707066 Prci3g2599 3 38702566 38707066 ECH