Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2593 ATGAATCACCTAGTGCGAGGCATGCAGCCAAAATTGGATCATGCTGACCATTCAGATCCAAATACCAGCAGCAATAAGCTGTATGTGACCTGTTCTCAAGCTCAGTGCCGTGGCCTGGGTAATGAAGCTTCCTGGAGTAGCATCGTAATGGAAGATAGAAAAACTAATGAAGAACATCAACAAACACAACTTCTTGTCCCTAGCGTGCCTTCAACAGTGAATGATTTTTTTGCTGTTGGCCCCTCAATGGCATGTGCCCCTTACCCATATTCTGGTCCCAGTTATGTAGGGGTGACCCCAACTCATGGGCCTCAGCCGCTGGCGCATCCTCATGATGTAGGAGTTCATACGGCCCAAATGGTCTTGCCGCTGGAAATTGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTGATAAAAGGCAGGAAGCCTTACCTTCACGAGTCGCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGTGGCCGTTTTCTGAACACAAAAAAACTTGGTAATGATACAACTTCTGCGAACACTACAACCAACAATGAGAATAGTGCTACTTGTGACCTTAGTAATGCCCTTTCTCTTGATTCAAATTCAACTTCCGAAAAAAACCAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGCGAGTTCTCGGCAGAGAGAGTCTAA 741 0.4656 MNHLVRGMQPKLDHADHSDPNTSSNKLYVTCSQAQCRGLGNEASWSSIVMEDRKTNEEHQQTQLLVPSVPSTVNDFFAVGPSMACAPYPYSGPSYVGVTPTHGPQPLAHPHDVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLGNDTTSANTTTNNENSATCDLSNALSLDSNSTSEKNQHCSHVQGFDLEGEFSAERV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2593 246 Gene3D - 127 188 - -
Prci3g2593 246 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700|GO:0006355
Prci3g2593 246 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 230 IPR001289 GO:0003700|GO:0006355
Prci3g2593 246 SMART cbf3 126 187 IPR001289 GO:0003700|GO:0006355
Prci3g2593 246 ProSitePatterns NF-YA/HAP2 subunit signature. 132 152 IPR018362 GO:0003677|GO:0016602
Prci3g2593 246 MobiDBLite consensus disorder prediction 1 23 - -
Prci3g2593 246 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700|GO:0006355
Prci3g2593 246 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700|GO:0006355
Prci3g2593 246 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2593 Prci-Chr3 38661093 38666309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2593 79 222 CCAAT-HAP2 Transcription Factor Family AT5G12840 47.917 1.79e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2593 CBFB_NFYA 7.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2593 K08064 - tcc:18598988 197.208