Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2592 ATGAATCACCTAGTGCGAGGCATGCAGCCAAAATTGGATCATGCTGACCATTCAGATCCAAATACCAGCAGCAATAAGCTGTATGTGACCTGTTCTCAAGCTCAGTGCCGTGGCCTGGGTAATGAAGCTTCCTGGAGTAGCATCGTAATGGAAGATAGAAAAACTAATGAAGAACATCAACAAACACAACTTCTTGTCCCTAGCGTGCCTTCAACAGTGAATGATTTTTTTGCTGTTGGCCCCTCAATGGCGCATCCTCATGATGTAGGAGTTCATACGGCCCAAATGGTCTTGCCGCTGGAAATTGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTGATAAAAGGCAGGAAGCCTTACCTTCACGAGTCGCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGTGGCCGTTTTCTGAACACAAAAAAACTTGGTAATGATACAACTTCTGCGAACACTACAACCAACAATGAGAATAGTGCTACTTGTGACCTTAGTAATGCCCTTTCTCTTGATTCAAATTCAACTTCCGAAAAAAACCAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGCGAGTTCTCGGCAGAGAGAGTCTAA 669 0.4529 MNHLVRGMQPKLDHADHSDPNTSSNKLYVTCSQAQCRGLGNEASWSSIVMEDRKTNEEHQQTQLLVPSVPSTVNDFFAVGPSMAHPHDVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLGNDTTSANTTTNNENSATCDLSNALSLDSNSTSEKNQHCSHVQGFDLEGEFSAERV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2592 222 Gene3D - 103 164 - -
Prci3g2592 222 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 105 160 IPR001289 GO:0003700|GO:0006355
Prci3g2592 222 ProSiteProfiles NF-YA/HAP2 family profile. 103 163 IPR001289 GO:0003700|GO:0006355
Prci3g2592 222 ProSitePatterns NF-YA/HAP2 subunit signature. 108 128 IPR018362 GO:0003677|GO:0016602
Prci3g2592 222 MobiDBLite consensus disorder prediction 1 23 - -
Prci3g2592 222 SMART cbf3 102 163 IPR001289 GO:0003700|GO:0006355
Prci3g2592 222 PRINTS CCAAT-binding transcription factor subunit B signature 137 160 IPR001289 GO:0003700|GO:0006355
Prci3g2592 222 PRINTS CCAAT-binding transcription factor subunit B signature 106 128 IPR001289 GO:0003700|GO:0006355
Prci3g2592 222 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 206 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2592 Prci-Chr3 38661093 38666309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2592 42 165 CCAAT-HAP2 Transcription Factor Family AT1G30500 50.394 4.48e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2592 CBFB_NFYA 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2592 K08064 - tcc:18598988 156.762