Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2591 ATGCAGTGTATTGGCACCATTTCAACAGATAGAAAAACTAATGAAGAACATCAACAAACACAACTTCTTGTCCCTAGCGTGCCTTCAACAGTGAATGATTTTTTTGCTGTTGGCCCCTCAATGGCATGTGCCCCTTACCCATATTCTGGTCCCAGTTATGTAGGGGTGACCCCAACTCATGGGCCTCAGCCGCTGGCGCATCCTCATGATGTAGGAGTTCATACGGCCCAAATGGTCTTGCCGCTGGAAATTGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTGATAAAAGGCAGGAAGCCTTACCTTCACGAGTCGCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGTGGCCGTTTTCTGAACACAAAAAAACTTGGTAATGATACAACTTCTGCGAACACTACAACCAACAATGAGAATAGTGCTACTTGTGACCTTAGTAATGCCCTTTCTCTTGATTCAAATTCAACTTCCGAAAAAAACCAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGCGAGTTCTCGGCAGAGAGAGTCTAA 615 0.4602 MQCIGTISTDRKTNEEHQQTQLLVPSVPSTVNDFFAVGPSMACAPYPYSGPSYVGVTPTHGPQPLAHPHDVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLGNDTTSANTTTNNENSATCDLSNALSLDSNSTSEKNQHCSHVQGFDLEGEFSAERV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2591 204 ProSitePatterns NF-YA/HAP2 subunit signature. 90 110 IPR018362 GO:0003677|GO:0016602
Prci3g2591 204 PRINTS CCAAT-binding transcription factor subunit B signature 88 110 IPR001289 GO:0003700|GO:0006355
Prci3g2591 204 PRINTS CCAAT-binding transcription factor subunit B signature 119 142 IPR001289 GO:0003700|GO:0006355
Prci3g2591 204 Gene3D - 85 146 - -
Prci3g2591 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 188 IPR001289 GO:0003700|GO:0006355
Prci3g2591 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 87 142 IPR001289 GO:0003700|GO:0006355
Prci3g2591 204 Coils Coil 201 204 - -
Prci3g2591 204 SMART cbf3 84 145 IPR001289 GO:0003700|GO:0006355
Prci3g2591 204 ProSiteProfiles NF-YA/HAP2 family profile. 85 145 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2591 Prci-Chr3 38661093 38666311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2591 37 180 CCAAT-HAP2 Transcription Factor Family AT5G12840 47.917 7.83e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2591 CBFB_NFYA 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2591 K08064 - tcc:18598988 194.126