Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2590 ATGCAGTGTATTGGCACCATTTCAAATAGAAAAACTAATGAAGAACATCAACAAACACAACTTCTTGTCCCTAGCGTGCCTTCAACAGTGAATGATTTTTTTGCTGTTGGCCCCTCAATGGCATGTGCCCCTTACCCATATTCTGGTCCCAGTTATGTAGGGGTGACCCCAACTCATGGGCCTCAGCCGCTGGCGCATCCTCATGATGTAGGAGTTCATACGGCCCAAATGGTCTTGCCGCTGGAAATTGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTGATAAAAGGCAGGAAGCCTTACCTTCACGAGTCGCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGTGGCCGTTTTCTGAACACAAAAAAACTTGGTAATGATACAACTTCTGCGAACACTACAACCAACAATGAGAATAGTGCTACTTGTGACCTTAGTAATGCCCTTTCTCTTGATTCAAATTCAACTTCCGAAAAAAACCAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGCGAGTTCTCGGCAGAGAGAGTCTAA 612 0.4592 MQCIGTISNRKTNEEHQQTQLLVPSVPSTVNDFFAVGPSMACAPYPYSGPSYVGVTPTHGPQPLAHPHDVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLGNDTTSANTTTNNENSATCDLSNALSLDSNSTSEKNQHCSHVQGFDLEGEFSAERV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2590 203 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 86 141 IPR001289 GO:0003700|GO:0006355
Prci3g2590 203 Gene3D - 84 145 - -
Prci3g2590 203 ProSiteProfiles NF-YA/HAP2 family profile. 84 144 IPR001289 GO:0003700|GO:0006355
Prci3g2590 203 PRINTS CCAAT-binding transcription factor subunit B signature 118 141 IPR001289 GO:0003700|GO:0006355
Prci3g2590 203 PRINTS CCAAT-binding transcription factor subunit B signature 87 109 IPR001289 GO:0003700|GO:0006355
Prci3g2590 203 SMART cbf3 83 144 IPR001289 GO:0003700|GO:0006355
Prci3g2590 203 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 187 IPR001289 GO:0003700|GO:0006355
Prci3g2590 203 ProSitePatterns NF-YA/HAP2 subunit signature. 89 109 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2590 Prci-Chr3 38661093 38666311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2590 36 179 CCAAT-HAP2 Transcription Factor Family AT5G12840 47.917 7.34e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2590 CBFB_NFYA 5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2590 K08064 - tcc:18598988 192.586