Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2589 ATGAATCACCTAGTGCGAGGCATGCAGCCAAAATTGGATCATGCTGACCATTCAGATCCAAATACCAGCAGCAATAAGCTGTATGTGACCTGTTCTCAAGCTCAGTGCCGTGGCCTGGGTAATGAAGCTTCCTGGAGTAGCATCGTAATGGAAGCAGATAGAAAAACTAATGAAGAACATCAACAAACACAACTTCTTGTCCCTAGCGTGCCTTCAACAGTGAATGATTTTTTTGCTGTTGGCCCCTCAATGGCGCATCCTCATGATGTAGGAGTTCATACGGCCCAAATGGTCTTGCCGCTGGAAATTGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTGATAAAAGGCAGGAAGCCTTACCTTCACGAGTCGCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGTGGCCGTTTTCTGAACACAAAAAAACTTGGTAATGATACAACTTCTGCGAACACTACAACCAACAATGAGAATAGTGCTACTTGTGACCTTAGTAATGCCCTTTCTCTTGATTCAAATTCAACTTCCGAAAAAAACCAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGCGAGTTCTCGGCAGAGAGAGTCTAA 672 0.4539 MNHLVRGMQPKLDHADHSDPNTSSNKLYVTCSQAQCRGLGNEASWSSIVMEADRKTNEEHQQTQLLVPSVPSTVNDFFAVGPSMAHPHDVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLGNDTTSANTTTNNENSATCDLSNALSLDSNSTSEKNQHCSHVQGFDLEGEFSAERV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2589 223 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 106 161 IPR001289 GO:0003700|GO:0006355
Prci3g2589 223 ProSitePatterns NF-YA/HAP2 subunit signature. 109 129 IPR018362 GO:0003677|GO:0016602
Prci3g2589 223 SMART cbf3 103 164 IPR001289 GO:0003700|GO:0006355
Prci3g2589 223 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 207 IPR001289 GO:0003700|GO:0006355
Prci3g2589 223 Gene3D - 104 165 - -
Prci3g2589 223 MobiDBLite consensus disorder prediction 1 23 - -
Prci3g2589 223 ProSiteProfiles NF-YA/HAP2 family profile. 104 164 IPR001289 GO:0003700|GO:0006355
Prci3g2589 223 PRINTS CCAAT-binding transcription factor subunit B signature 138 161 IPR001289 GO:0003700|GO:0006355
Prci3g2589 223 PRINTS CCAAT-binding transcription factor subunit B signature 107 129 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2589 Prci-Chr3 38661093 38666311 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2589 90 166 CCAAT-HAP2 Transcription Factor Family AT1G30500 68.831 1.04e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2589 CBFB_NFYA 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2589 K08064 - tcc:18598988 160.999