Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2587 ATGAATCACCTAGTGCGAGGCATGCAGCCAAAATTGGATCATGCTGACCATTCAGATCCAAATACCAGCAGCAATAAGCTGTATGTGACCTGTTCTCAAGCTCAGTGCCGTGGCCTGGGTAATGAAGCTTCCTGGAGTAGCATCGTAATGGAAGCAGATAGAAAAACTAATGAAGAACATCAACAAACACAACTTCTTGTCCCTAGCGTGCCTTCAACAGTGAATGATTTTTTTGCTGTTGGCCCCTCAATGGCATGTGCCCCTTACCCATATTCTGGTCCCAGTTATGTAGGGGTGACCCCAACTCATGGGCCTCAGCCGCTGGCGCATCCTCATGATGTAGGAGTTCATACGGCCCAAATGGTCTTGCCGCTGGAAATTGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTGATAAAAGGCAGGAAGCCTTACCTTCACGAGTCGCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGTGGCCGTTTTCTGAACACAAAAAAACTTGGTAATGATACAACTTCTGCGAACACTACAACCAACAATGAGAATAGTGCTACTTGTGACCTTAGTAATGCCCTTTCTCTTGATTCAAATTCAACTTCCGAAAAAAACCAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGCGAGTTCTCGGCAGAGAGAGTCTAA 744 0.4664 MNHLVRGMQPKLDHADHSDPNTSSNKLYVTCSQAQCRGLGNEASWSSIVMEADRKTNEEHQQTQLLVPSVPSTVNDFFAVGPSMACAPYPYSGPSYVGVTPTHGPQPLAHPHDVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLGNDTTSANTTTNNENSATCDLSNALSLDSNSTSEKNQHCSHVQGFDLEGEFSAERV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2587 247 Gene3D - 128 189 - -
Prci3g2587 247 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 231 IPR001289 GO:0003700|GO:0006355
Prci3g2587 247 ProSiteProfiles NF-YA/HAP2 family profile. 128 188 IPR001289 GO:0003700|GO:0006355
Prci3g2587 247 SMART cbf3 127 188 IPR001289 GO:0003700|GO:0006355
Prci3g2587 247 MobiDBLite consensus disorder prediction 1 23 - -
Prci3g2587 247 PRINTS CCAAT-binding transcription factor subunit B signature 162 185 IPR001289 GO:0003700|GO:0006355
Prci3g2587 247 PRINTS CCAAT-binding transcription factor subunit B signature 131 153 IPR001289 GO:0003700|GO:0006355
Prci3g2587 247 ProSitePatterns NF-YA/HAP2 subunit signature. 133 153 IPR018362 GO:0003677|GO:0016602
Prci3g2587 247 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 130 185 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2587 Prci-Chr3 38661093 38666517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2587 80 223 CCAAT-HAP2 Transcription Factor Family AT5G12840 47.917 2.08e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci3g2587 CBFB_NFYA 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2587 K08064 - tcc:18598988 201.445