LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g2587	ATGAATCACCTAGTGCGAGGCATGCAGCCAAAATTGGATCATGCTGACCATTCAGATCCAAATACCAGCAGCAATAAGCTGTATGTGACCTGTTCTCAAGCTCAGTGCCGTGGCCTGGGTAATGAAGCTTCCTGGAGTAGCATCGTAATGGAAGCAGATAGAAAAACTAATGAAGAACATCAACAAACACAACTTCTTGTCCCTAGCGTGCCTTCAACAGTGAATGATTTTTTTGCTGTTGGCCCCTCAATGGCATGTGCCCCTTACCCATATTCTGGTCCCAGTTATGTAGGGGTGACCCCAACTCATGGGCCTCAGCCGCTGGCGCATCCTCATGATGTAGGAGTTCATACGGCCCAAATGGTCTTGCCGCTGGAAATTGCAGAGGAGCCTGTTTATGTGAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCGATTACGTGCCAAGGCTGAGCTGGAAAAGAAGCTGATAAAAGGCAGGAAGCCTTACCTTCACGAGTCGCGACATTTGCATGCAATGAGAAGAGCCAGAGGATGTGGTGGCCGTTTTCTGAACACAAAAAAACTTGGTAATGATACAACTTCTGCGAACACTACAACCAACAATGAGAATAGTGCTACTTGTGACCTTAGTAATGCCCTTTCTCTTGATTCAAATTCAACTTCCGAAAAAAACCAGCACTGCTCACACGTTCAGGGATTTGATCTTGAAGGCGAGTTCTCGGCAGAGAGAGTCTAA	744	0.4664	MNHLVRGMQPKLDHADHSDPNTSSNKLYVTCSQAQCRGLGNEASWSSIVMEADRKTNEEHQQTQLLVPSVPSTVNDFFAVGPSMACAPYPYSGPSYVGVTPTHGPQPLAHPHDVGVHTAQMVLPLEIAEEPVYVNAKQYHGILRRRRLRAKAELEKKLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLGNDTTSANTTTNNENSATCDLSNALSLDSNSTSEKNQHCSHVQGFDLEGEFSAERV	247

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci3g2587	247	Gene3D	-	128	189	-	-
Prci3g2587	247	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	17	231	IPR001289	GO:0003700\|GO:0006355
Prci3g2587	247	ProSiteProfiles	NF-YA/HAP2 family profile.	128	188	IPR001289	GO:0003700\|GO:0006355
Prci3g2587	247	SMART	cbf3	127	188	IPR001289	GO:0003700\|GO:0006355
Prci3g2587	247	MobiDBLite	consensus disorder prediction	1	23	-	-
Prci3g2587	247	PRINTS	CCAAT-binding transcription factor subunit B signature	162	185	IPR001289	GO:0003700\|GO:0006355
Prci3g2587	247	PRINTS	CCAAT-binding transcription factor subunit B signature	131	153	IPR001289	GO:0003700\|GO:0006355
Prci3g2587	247	ProSitePatterns	NF-YA/HAP2 subunit signature.	133	153	IPR018362	GO:0003677\|GO:0016602
Prci3g2587	247	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	130	185	IPR001289	GO:0003700\|GO:0006355

Showing 1 to 9 of 9 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g2587	Prci-Chr3	38661093	38666517	Tandem

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g2587	80	223	CCAAT-HAP2 Transcription Factor Family	AT5G12840	47.917	2.08e-39	135

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Prci3g2587		CBFB_NFYA	7.2e-26	No_clan

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g2587	K08064		-	tcc:18598988	201.445

Showing 1 to 1 of 1 entries