Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2554 ATGGAGGATGTGAAGAATAAAGAGTCGTTGGATCAGTTACATGCAAGCAGGAAGTCGAACCCACCACCCTTCTTGTTAAAGACATACATGCTGGTGGAGGATCCGGCCACCGACGGCGTCATATCTTGGAACACCGACGGCACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGACCTTCTTCCTACTCTCTTCAAGCACAGCAACTTCTCCAGCTTTGTTCGCCAGCTGAATACATATGGATTTCGTAAAGCGGCGACGAACAGATGGGAATTCTGCAACAACAAGTTTAGGAAGGGGGAGAAAGAAAAACTAGGTGAGATTAGACGAAGAAAGGCATGGGCGAACAAGCAACAACAACAACCAGCTACGACAACACAAGCTAATCATCAGGAATATTCTGAGGAAGACCAAAGGTCTTCTTCGACTTCTTCATCTTCTGGATACTCTACTCTCGTCGATGAAAACAAGAGACTCAGGAGAGAGAATGGGGAGTTGAACTCTGAGCTCGCGGCCATGAAGAGGAAGTGCAGGGACCTGCTCGAGCTCGTGGCCAAGCATGCCAAGAAAAACGAGGAAGAAGACGAGAGGCCTATGTTATTTGGGGTCAGGCTTGATGTGAGCCAAGGACAGAGAGACATGAAGACAGAGACACTTAAAAAAGAAGGGCAATATTTCGTCCACGCGCCGCGAAAGCTCAACAGTCCGCTCCAGCTCGCACAACGCATGAAGTTGTTGACCGTCCCTTGA 756 0.4974 MEDVKNKESLDQLHASRKSNPPPFLLKTYMLVEDPATDGVISWNTDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKAATNRWEFCNNKFRKGEKEKLGEIRRRKAWANKQQQQPATTTQANHQEYSEEDQRSSSTSSSSGYSTLVDENKRLRRENGELNSELAAMKRKCRDLLELVAKHAKKNEEEDERPMLFGVRLDVSQGQRDMKTETLKKEGQYFVHAPRKLNSPLQLAQRMKLLTVP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2554 251 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 219 IPR027725 -
Prci3g2554 251 MobiDBLite consensus disorder prediction 115 158 - -
Prci3g2554 251 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g2554 251 MobiDBLite consensus disorder prediction 140 155 - -
Prci3g2554 251 Gene3D - 15 114 IPR036388 -
Prci3g2554 251 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g2554 251 Coils Coil 151 185 - -
Prci3g2554 251 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g2554 251 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g2554 251 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g2554 251 FunFam Heat stress transcription factor B-4 16 114 - -
Prci3g2554 251 SUPERFAMILY "Winged helix" DNA-binding domain 19 113 IPR036390 -
Prci3g2554 251 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2554 Prci-Chr3 38502726 38504943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2554 21 189 HSF AT2G41690 61.667 4.34e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci3g2554 HSF_DNA-bind 1.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2554 K09419 - qsu:112013936 307.375