Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2521 ATGGAAGTCGAGGACGAAAAGACTACCTCTACTGTTTCTACGGAAACCTCTGTACCAACATCTGATGCTCAAAGCATGGTTTCTCCTATTCCTGCGGTGCAGCCTGTAATTCCGACAGTCGTTCCACCATCTGTTGTGCCTCCTATTGCTCCAATTCCTTCAATTCCTCCCTCCACTACTCTCCGCCCACTGGCACCACTTCCTGTTCGTCCACCTTCTATTAGGCCACCCGTGTCGCAAAATGGTGAGGTTAGATCAACTGACTCAGATTCAGATCATGATGACTTAGGACCCGGGATAAACAAGGGTACGGGGGAGTATGAGATATCAGAAGAGAGTAGAGTGGTAAGAGAAAGGCAGGAAAAGGCAATGCAGGAACTTATGATGAAGAGGCGCGCTGCTGCTCTGGCTGTTCCTACAAATGACATGGCTGTGCGGGCTCGTCTTCGCCGTCTCGGTGAACCCATCACTCTCTTCGGTGAAAGGGAAATGGAGAGAAGAGATAGGTTGCGAATGATTATGGCCAAGTTGGATGCTGAAGGTCAGCTGGAAAAACTGATGAAAGCTCATGAAGATGAAGAGGCCGCAGCTTCTTCTGCCAAAGATGAAGCCGAGGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAGTTTTCTTTAGTAAGAGCAGCAACACGTCTGCATCGTGCTCAGAGAAGAAGAGATGATCCAGATGAAGATATAGATGCGGAAATAAATTGGGCGTTAAACCAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATTGGAGATGATCGTCCACTTTCTGGTTGCTCCTTCTCAGCAGATGGAAAATGGCTTGCTACCTGTTCCCTGACTGGAGCTGCGAAACTTTGGAGCATGCCTGAAGTTCAAAAAATTTCTACCTTAAAGGGCCACTTCGAGCGTGCTACTGATGTTGCCTACTCTCCTGTGCATAACCATTTAGCAACGGCCTCTGCTGACCGCACTGCAAGGTATTGGAATGATCAAGGATCTCTTTTACAGACATTTGAGGGTCATCTTGACCGTCTTGCTCGCATTTCCTTCCATCCATCTGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTGTGGGATGTAGAAACAGGAGAGGAGTTGCTTCTCCAAGAAGGTCACAGTAGGAGTGTATATGGTTTAGATTTCCACCATGACGGATCATTAGCTGCATCTTGCGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGTACTGGGAGAAGTATTCTTGCCCTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCCAATGGTTATCATTTAGCCACAGGTGGCGAAGACAACACTTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCTTGTATATCATTCCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACATGAGGGTTATTTTTTGGTAACAGCTTCGTATGATATGACAGCTAAGGTATGGTCAGCTCGTGATTTTAAGCCTGTCAAAACTTTATCTGGGCATGAAGCAAAAGTTACTTCTCTAGATGTTCTTGGAGATGGACGGTACATTGCTACTGTCTCCCATGATCGAACCATTAAGTTGTGGTCCAGCAACATGGCTAGTGAGCAAGCCATGGATGTTGAGTGTTGA 1713 0.4658 MEVEDEKTTSTVSTETSVPTSDAQSMVSPIPAVQPVIPTVVPPSVVPPIAPIPSIPPSTTLRPLAPLPVRPPSIRPPVSQNGEVRSTDSDSDHDDLGPGINKGTGEYEISEESRVVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASSAKDEAEEDLQYPFYTEGSKALLDARVDIAKFSLVRAATRLHRAQRRRDDPDEDIDAEINWALNQAENLVLDCSEIGDDRPLSGCSFSADGKWLATCSLTGAAKLWSMPEVQKISTLKGHFERATDVAYSPVHNHLATASADRTARYWNDQGSLLQTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLDFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKFEPHEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGRYIATVSHDRTIKLWSSNMASEQAMDVEC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2521 570 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 255 439 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 347 IPR001680 GO:0005515
Prci3g2521 570 MobiDBLite consensus disorder prediction 1 29 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 347 - -
Prci3g2521 570 ProSitePatterns Trp-Asp (WD) repeats signature. 459 473 IPR019775 -
Prci3g2521 570 Gene3D - 368 443 IPR015943 GO:0005515
Prci3g2521 570 Pfam WD domain, G-beta repeat 350 388 IPR001680 GO:0005515
Prci3g2521 570 Pfam WD domain, G-beta repeat 399 430 IPR001680 GO:0005515
Prci3g2521 570 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Prci3g2521 570 Pfam WD domain, G-beta repeat 438 472 IPR001680 GO:0005515
Prci3g2521 570 Pfam WD domain, G-beta repeat 478 515 IPR001680 GO:0005515
Prci3g2521 570 Pfam WD domain, G-beta repeat 520 557 IPR001680 GO:0005515
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 393 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 515 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 481 IPR001680 GO:0005515
Prci3g2521 570 SUPERFAMILY WD40 repeat-like 272 556 IPR036322 GO:0005515
Prci3g2521 570 SUPERFAMILY PRP4-like 123 178 IPR036285 -
Prci3g2521 570 SMART pr04_2 140 193 IPR014906 -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 435 - -
Prci3g2521 570 Coils Coil 176 207 - -
Prci3g2521 570 Gene3D - 115 185 IPR036285 -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 525 557 IPR001680 GO:0005515
Prci3g2521 570 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 483 559 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 525 557 - -
Prci3g2521 570 MobiDBLite consensus disorder prediction 54 75 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 397 IPR001680 GO:0005515
Prci3g2521 570 Gene3D - 258 367 IPR015943 GO:0005515
Prci3g2521 570 PANTHER WD40 REPEAT PROTEIN 95 558 - -
Prci3g2521 570 CDD WD40 279 557 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 524 IPR001680 GO:0005515
Prci3g2521 570 ProSitePatterns Trp-Asp (WD) repeats signature. 417 431 IPR019775 -
Prci3g2521 570 MobiDBLite consensus disorder prediction 54 114 - -
Prci3g2521 570 MobiDBLite consensus disorder prediction 10 28 - -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 474 - -
Prci3g2521 570 Pfam pre-mRNA processing factor 4 (PRP4) like 145 171 IPR014906 -
Prci3g2521 570 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Prci3g2521 570 PRINTS G protein beta WD-40 repeat signature 459 473 IPR020472 -
Prci3g2521 570 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Prci3g2521 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Prci3g2521 570 ProSitePatterns Trp-Asp (WD) repeats signature. 375 389 IPR019775 -
Prci3g2521 570 Gene3D - 444 568 IPR015943 GO:0005515
Prci3g2521 570 SMART WD40_4 518 557 IPR001680 GO:0005515
Prci3g2521 570 SMART WD40_4 264 305 IPR001680 GO:0005515
Prci3g2521 570 SMART WD40_4 391 430 IPR001680 GO:0005515
Prci3g2521 570 SMART WD40_4 475 515 IPR001680 GO:0005515
Prci3g2521 570 SMART WD40_4 349 388 IPR001680 GO:0005515
Prci3g2521 570 SMART WD40_4 433 472 IPR001680 GO:0005515
Prci3g2521 570 SMART WD40_4 308 347 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2521 360 556 U-box Gene Family AT2G33340 23.529 2.14e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2521 K12662 - gmx:100788948 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2521 3 38215567 38219914 Prci3g2521 3 38215567 38219914 ECH