Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2499 ATGTCCCTCGAAGATTCTCTAAGATCTCTGTCGCTGGACTTCCTCAACCTTCTCATCAACGGCCAAGCCTTCAGTGACGTCACCTTCAGCGTTGAGGGTCGTCTTGTCCACGCTCATCGATGCATCCTCGCTGCTCGGAGCCTCTTCTTCAGGAAATTCTTCTGTGCCCCGGACCCTCCGTCGGGACTGGACCTGGCCGGCTCCCGGGTCAACTCTTCCGCTTCCGGCCCAAGACCCGGGATCATTCCGGTTAACTCGGTCGGGTACGAAGTGTTCTTGTTGCTTCTTCAGTTCCTGTACAGCGGACAAGTGTCTATTGTGCCCCAGAAGCACGAGCCCCGGCCTAATTGTGGCGAGCGAGGATGCTGGCACACGCATTGCACCTCCGCCGTTGATCTTGCTCTCGACACTCTTGCCGCCGCCAGATCTTTTGGTGTTGAACAGCTTGCATTGCTCACCCAGAAACAGTTAACGAGTATGGTAGAGAAGGCGTCCATCGAAGATGTAATGAAAGTGCTGGTAGCATCGAGAAAGCAAGACATGCACCAGCTGTGGGCCACTTGCTCCCACCTTGTTGCCAAGTCAGGTCTCCCACCTGAAGTGCTCGCCAAACACCTTCCCATAGACGTCGTTGCGAAGATCGAAGAGATTCGTCTCAAATCCTCCTTCACTCGCCGCTCTCTATTGCCCTATCACCACCCAGACATCCGCGTCGCCGACCTTGAGGACCAGAAAATCCGGCGAATGAAAAGAGCGCTGGACTCTTCCGATGTGGAGCTTGTGAAGCTCATGGTAATGGGGGAGGGCCTGAATCTAGACGAAGCATTGGCCTTGCACTACGCCGTAGAGAATTGCAGCCGAGAAGTGGTGAAAGCATTGCTGGAGCTGGGTGCGGCCGATGTCAACTATCCGGCCGGGCCTGCGGGGAAAAGCCCGCTCCACATTGCATCGGAGATGGTATCGCCGGACATGGTTGCAGTGCTCTTGGACCACCACGCCGATCCGAATGTCCGCACCGTCGATGGCGTGACCCCGCTTGACATTCTCAGAACCCTAACTTCGGATTTCCTGTTCAAAGGGGCCGTGCCTGGGCTAACCCACATCGAACCCAACAAGCTGAGGCTATGCTTGGAGCTGGTTCAGTCGGCGGCCCTCGTGATTTCTCGTGAAGAAGGAAATGCCAATCCTCCCACATCGGCGGCCATATATCCCCCGCTGAGTGAAGATCATAGCAGCGGTAGCAGCAGCAACCTGAACCTGGATTCGAGGCTGGTTTATCTGAATCTAGGTGCGGCGGCTTCGGGTCAAATAGTTTCCAGATTGGACGGAGATGACGATAGCCACAGGGATCCCATGAACCGTCATGGCTCGCATCGAGTTGGATGTGACCCAACAATGTACCACCACCATCACTCGCATGATTTCTAG 1428 0.5553 MSLEDSLRSLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCAPDPPSGLDLAGSRVNSSASGPRPGIIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLTSMVEKASIEDVMKVLVASRKQDMHQLWATCSHLVAKSGLPPEVLAKHLPIDVVAKIEEIRLKSSFTRRSLLPYHHPDIRVADLEDQKIRRMKRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKSPLHIASEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVISREEGNANPPTSAAIYPPLSEDHSSGSSSNLNLDSRLVYLNLGAAASGQIVSRLDGDDDSHRDPMNRHGSHRVGCDPTMYHHHHSHDF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2499 475 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Prci3g2499 475 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 471 IPR044284 GO:0099402
Prci3g2499 475 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Prci3g2499 475 Gene3D Potassium Channel Kv1.1; Chain A 3 194 IPR011333 -
Prci3g2499 475 SMART BTB_4 25 161 IPR000210 GO:0005515
Prci3g2499 475 Pfam BTB/POZ domain 16 109 IPR000210 GO:0005515
Prci3g2499 475 MobiDBLite consensus disorder prediction 441 465 - -
Prci3g2499 475 SUPERFAMILY POZ domain 9 190 IPR011333 -
Prci3g2499 475 CDD BTB_POZ_NPR_plant 8 161 - -
Prci3g2499 475 FunFam regulatory protein NPR5 isoform X2 239 356 - -
Prci3g2499 475 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Prci3g2499 475 SMART ANK_2a 273 303 IPR002110 GO:0005515
Prci3g2499 475 SMART ANK_2a 308 337 IPR002110 GO:0005515
Prci3g2499 475 Pfam Domain of unknown function (DUF3420) 196 249 IPR024228 -
Prci3g2499 475 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Prci3g2499 475 MobiDBLite consensus disorder prediction 391 415 - -
Prci3g2499 475 Gene3D - 240 356 IPR036770 -
Prci3g2499 475 ProSiteProfiles Ankyrin repeat region circular profile. 308 338 - -
Prci3g2499 475 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2499 Prci-Chr3 38039071 38042133 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Prci3g2499 BTB 8.6e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2499 K14508 - zju:107433767 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3391 1 51289564 51292792 Prci3g2499 3 38039071 38042133 CCT
Prci3g2499 3 38039071 38042133 Prci3g2499 3 38039071 38042133 ECH