Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2488 ATGTTGGCTTTGTCGCCTTCTCTGCTCGCACCCATTGAGTGGGCCTTGGAGGAACCCACGAGTCATAATGATCAGAACTTGTTTTACAAAGACGGATCAGCTACTCTTCAGTTCAGTTGCTCGCCACCAGATCATCAGGTTCAGGCTGAGGCTGAGGAGGTTCAGAGATCTACGCCAGTATCGCTTGCCGTAAGCGGAGACCCTACCATGGTCAAAAAGCTTAACCACAATGCTACTGAACGCGATCGTCGCAAGAAGATCAACAGCTTGTATTCCTCGCTTTGTTCAATGCTTCCTTTGACTGATCAACCGAAAAAGTTAAGCATTCCGGCAACAATTTCACGAGTCCTAAAGTACATACCGGAGCTACAGCGGCAAGTGGAAGGGCTTGTCAAGAAAAAGGAGGAGCTGTTGTTGAGAATCTCTCCGGTAGGAGACGCGGCATGCCAAGAATCTCGTAGGAAAATGGCTCATCGCTGCGCTGCAACTTCTTGTGTAGTTTCAACGAGAAGGCTCAATGATAATGAAGCTGTTATTCAGATTTCCTCTGACAAGCTCCACAGAACTCCTTTCTCTGAGATATTGCTGTGTTTAGAAAAGGAAGGGCTTTTACCGCTAAATGCTTCGACCATTGCGACCTCTGGACAAAGGATCTTCTATAACTTGCACTTGCAGATGGATGAAACTTGTAGAATAGAGCTAGAAATTCTAAGCGAGAACCTTTTGTCAATATATGAGAAGGAAGGGAATTTTCAATGTTTCTCAATCTCATGA 774 0.4548 MLALSPSLLAPIEWALEEPTSHNDQNLFYKDGSATLQFSCSPPDHQVQAEAEEVQRSTPVSLAVSGDPTMVKKLNHNATERDRRKKINSLYSSLCSMLPLTDQPKKLSIPATISRVLKYIPELQRQVEGLVKKKEELLLRISPVGDAACQESRRKMAHRCAATSCVVSTRRLNDNEAVIQISSDKLHRTPFSEILLCLEKEGLLPLNASTIATSGQRIFYNLHLQMDETCRIELEILSENLLSIYEKEGNFQCFSIS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2488 257 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Prci3g2488 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Prci3g2488 257 FunFam Transcription factor ORG2 67 159 - -
Prci3g2488 257 SMART finulus 77 129 IPR011598 GO:0046983
Prci3g2488 257 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 57 243 - -
Prci3g2488 257 CDD bHLH_AtORG2_like 72 142 - -
Prci3g2488 257 Coils Coil 120 140 - -
Prci3g2488 257 Gene3D - 67 157 IPR036638 GO:0046983
Prci3g2488 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2488 Prci-Chr3 37909901 37911626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2488 1 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.860 1.26e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g2488 HLH 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2488 - - pcin:129307381 486.493