Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2487 ATGTTGGCTTTATCGCCTTCTTCGTTTGCACCCATCGAGTGGGCCTTGGAAGAACCCACAAGTCATAATGATCAGAACTTGTTTTACCAGGACGGAGCCACTCTTCAGTTTAGTTGCTCGCCACCAGATTATCAGGTTCGTCAGGTTGAGGCTGAGGAGACTCATAGATCTACGCCAGTATCCCTTGGCGTGAGCGGCGACCCTACCATGGTCAAAAAGCTAAACCACAATGCTAGTGAACGAGATCGTCGCAAGAAGATCAATAGCTTGTATTCCTCGCTTCGTTCTATGCTTCCTTTGCCTGATCAAACTAAAAAGTTGAGTATTCCAGCAACAATTTCACGAATCCTTAAGTACATACCGGAGCTACAGCAGCAAGTGGAAGGTCTTATTAAGAAAAAGGAGGAGCTTTTGCTGAGAATCTCTCGGCAAGGAGATGCGTCAAACAGAGAATCTCAAAGGAAAAGGGTTCATCCCTACGCTGCCACTGCTTGTGTAGTTTCAACAAGCAGACTCAATGATAATGAATCTGTTATTCAGATTTCCTCTGACAAGCTCCACAAAACTCCTTTTCCTGACATATTGCTGTGTCTAGAAAAAGAAGGGCTTTTACTGCTAAACGCTTCCACCTTTGTGACCTTTGGACAACGGGCCTTCTATAACTTGCATTTGCAGATGGATGAAACTTGTAGAATAGAGCCAGAAGTTCTAAGTGAGAAGATTTTGTCAATATATGATAAGAAGGAAGGGAATTTTCAATGTTTCTAA 768 0.4323 MLALSPSSFAPIEWALEEPTSHNDQNLFYQDGATLQFSCSPPDYQVRQVEAEETHRSTPVSLGVSGDPTMVKKLNHNASERDRRKKINSLYSSLRSMLPLPDQTKKLSIPATISRILKYIPELQQQVEGLIKKKEELLLRISRQGDASNRESQRKRVHPYAATACVVSTSRLNDNESVIQISSDKLHKTPFPDILLCLEKEGLLLLNASTFVTFGQRAFYNLHLQMDETCRIEPEVLSEKILSIYDKKEGNFQCF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2487 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 141 IPR036638 GO:0046983
Prci3g2487 255 Gene3D - 66 157 IPR036638 GO:0046983
Prci3g2487 255 FunFam Transcription factor ORG2 67 152 - -
Prci3g2487 255 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Prci3g2487 255 Coils Coil 120 140 - -
Prci3g2487 255 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 59 241 - -
Prci3g2487 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Prci3g2487 255 CDD bHLH_AtORG2_like 72 144 - -
Prci3g2487 255 SMART finulus 77 129 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2487 Prci-Chr3 37906647 37908060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2487 1 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.446 1.19e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g2487 HLH 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2487 - - pcin:129307381 384.415