Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2457 ATGGAAGATGACGAGTTCATCGACCTACCTGGCCAACCTTCTCAAGGTCCTTCTTCGTCGGAAAGATACCTGCTAGGCTTCGTCTGCGCCCACATCGTTGGGATTAAACACTATTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGGGAACCTCTCAACCCCTACGATGAGAACGCCATTAAGGTCCTCAACACTCGAGCAGATCAGGTTGGGCATATTGAGCGCTCAGTCGCTGCCGTACTGTCTCCCTTGATAGACTCCAACCTTATCATTGTGGAAGGCATTGTGCCCAAAACGTATTCTGGTAACAAATTCAAGATTCCTTGTCAAATTCATATATTTACGACGATTGAGACTTTTCCAGCCGTGAAAGATGTGATTTCAGAAGGTGGGTTAACTTTAATTTTAGTATCCGATGCAGCGTCTACGTTGTCAGAGTCTATGGCTGTGAAAGATAAGATGGCTAAGAAAGAGTTTAAGTCTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAGGGGTGCATTGGAAGCATTGGAGCCTCCTCGAAGCGTCATCAAGTCTAATCTTTTCCTGCATCAGAAGGAAGGTTTAGGATGGTTAGTTCATAGAGAGAATTCTACTGAATTGCCGCCGTTTTGGGAAGAAAAAGATGGAGCCTTTGTGAATGTTTTGACTAATTATCATACGAACATAAGGCCGGAGCCTTTGCGAGGTGGTATTTTAGCCGATGATATGGGATTAGGCAAAACCTTAACTTTACTTTCTTTAATTGCTCTTGATAAAGATTCTTTCACTCTAAATATGGAAGAAGGAAAGCATGATGAAGGTTTCGCTGTTTCAAGTGATAAGAAGAGGAGAAGAACTAATATACAGACCACTGTATCAGAAAAAAGACGCAAGACTGAGAGTACTTCTTCAAGGGGCCATGTAAATGAAAAATCTGTTCTTGTAGATGGCACACCTTCAACTGGCATGGATACAAAGACTACATTGGTTGTGTGCCCTGCTTCTGTAATTTCAACATGGATATCACAGTTAGAAGAACATACTAAACCAGGCACATTGAAGACGTACATGTATTATGGTGATAGAAGGACCGAGGATGCTGAAGAACTTAAGATGTATGATTTAGTGTTAACCACATACACCACTTTAGCTATTGAAGAATCTTCTCCAGAGTCACCCATAAATAAAGTAGATTGGTGGAGGGTCATTTTGGACGAAGCACATGTTATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATCATGAAAATTGTAGCTAAGCGGAGGTGGGCTGTTACAGGAACACCAATTCAAAACGGTTTATATGATTTATTTTCTCTCATGTCATTTTTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCAGAGCTTAGTGCAACTTCCTCTTGCTGAAAGAAACCCAAACGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCATTGCGAAGAACAAAAGATAAAGCATTGGTAGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTGTATGATCAGATTGAATCGCAAGCAAAGAACATAGTGGCGGGTTATTTAAATGATGGAAGCTTAATGCGCAACTATTCCACTGTACTTGGAATAATTTTACGGCTTCGCCAAATTTGTACCGATATGGCATTGTGCCCTTCAGATCTCAAATCTTTACTCCCTTCAAATAACATTGAAGATGTTTCCAATAACCCGGAGTTGCTGCAAAAGTTGGTTGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCTCCAACTGACATTGTAATTACATGTTGTGCTCACATATTCTGCCAAGCTTGTATTCTGAAAACCCTGCAACGGAGCAAAGCCTGCTGTCCCCTTTGTCGTCACCCCCTCAAAGAATCTGACTTGTTCTCTGCGCCGCCTCAATCTTCTGATGGTGATGCTACTGGACTGTCCTCAGACAAAACAAGCTTATCCTCTAAGGTGTCTTCTCTGCTAAAACTTCTTGTTGCCACAAGGGATCAACATCCAGCTGCAAAATCAGTTGTATTTTCTCAATTTCGTAAGATGCTGATTTTACTGGAACAGCCTCTGAAAGTAGCTGGTTTCAAGATATTGCGTCTTGACGGGACCATGAATGCTAAACGAAGGGCTCGGGTTATGGAAGAATTTGCAGTTGGAGGAACAGATGAGCCCACGGTTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTGTTGGAGCCATGGTGGAACCCGGGAGTGGAGGAACAAGCAATGGATCGTGTGCACCGCATTGGGCAGAAAGAGGAGGTGAAGATTGTAAGACTGATTGCTAAAAACAGCATTGAAGAGAGGATATTGGAGTTGCAAGAGAAGAAGCAGCAGCTTGCCAAGGAAGCATTTGGAAAGAGGAGAGGGAGGAATGGTAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTATCCTTGTGA 2574 0.4239 MEDDEFIDLPGQPSQGPSSSERYLLGFVCAHIVGIKHYSGTISGREMVGLVREPLNPYDENAIKVLNTRADQVGHIERSVAAVLSPLIDSNLIIVEGIVPKTYSGNKFKIPCQIHIFTTIETFPAVKDVISEGGLTLILVSDAASTLSESMAVKDKMAKKEFKSVDEIFKLVDENISKRGALEALEPPRSVIKSNLFLHQKEGLGWLVHRENSTELPPFWEEKDGAFVNVLTNYHTNIRPEPLRGGILADDMGLGKTLTLLSLIALDKDSFTLNMEEGKHDEGFAVSSDKKRRRTNIQTTVSEKRRKTESTSSRGHVNEKSVLVDGTPSTGMDTKTTLVVCPASVISTWISQLEEHTKPGTLKTYMYYGDRRTEDAEELKMYDLVLTTYTTLAIEESSPESPINKVDWWRVILDEAHVIKNVNAKQSQAIMKIVAKRRWAVTGTPIQNGLYDLFSLMSFLRFQPFSTKSYWQSLVQLPLAERNPNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESQAKNIVAGYLNDGSLMRNYSTVLGIILRLRQICTDMALCPSDLKSLLPSNNIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIFCQACILKTLQRSKACCPLCRHPLKESDLFSAPPQSSDGDATGLSSDKTSLSSKVSSLLKLLVATRDQHPAAKSVVFSQFRKMLILLEQPLKVAGFKILRLDGTMNAKRRARVMEEFAVGGTDEPTVLLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERILELQEKKQQLAKEAFGKRRGRNGREVGGDDFRMLLSL 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2457 857 MobiDBLite consensus disorder prediction 284 316 - -
Prci3g2457 857 Gene3D - 511 856 IPR027417 -
Prci3g2457 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 483 IPR027417 -
Prci3g2457 857 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 149 853 - -
Prci3g2457 857 Gene3D - 173 286 IPR038718 -
Prci3g2457 857 Gene3D - 17 137 - -
Prci3g2457 857 Pfam SNF2-related domain 199 571 IPR000330 GO:0005524|GO:0140658
Prci3g2457 857 CDD SF2_C_SNF 698 811 - -
Prci3g2457 857 SUPERFAMILY RING/U-box 596 657 - -
Prci3g2457 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 674 IPR013083 -
Prci3g2457 857 SMART ring_2 612 650 IPR001841 -
Prci3g2457 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 840 IPR027417 -
Prci3g2457 857 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 463 IPR014001 -
Prci3g2457 857 SMART helicmild6 715 800 IPR001650 -
Prci3g2457 857 Coils Coil 813 833 - -
Prci3g2457 857 SMART HIRAN_2 25 120 IPR014905 GO:0003676|GO:0008270|GO:0016818
Prci3g2457 857 MobiDBLite consensus disorder prediction 284 314 - -
Prci3g2457 857 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 687 847 IPR001650 -
Prci3g2457 857 Pfam HIRAN domain 26 104 IPR014905 GO:0003676|GO:0008270|GO:0016818
Prci3g2457 857 ProSiteProfiles Zinc finger RING-type profile. 612 651 IPR001841 -
Prci3g2457 857 Pfam Zinc finger, C3HC4 type (RING finger) 612 650 IPR018957 GO:0046872
Prci3g2457 857 Gene3D - 320 502 IPR038718 -
Prci3g2457 857 Pfam Helicase conserved C-terminal domain 684 800 IPR001650 -
Prci3g2457 857 CDD RING-HC_HLTF 607 659 - -
Prci3g2457 857 ProSitePatterns Zinc finger RING-type signature. 627 636 IPR017907 -
Prci3g2457 857 SMART ultradead3 192 475 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2457 Prci-Chr3 37655478 37659939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2457 3 857 RAD5 or RAD16-like Gene Family AT5G05130 62.804 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci3g2457 SNF2_N 1.1e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2457 K15711 - vvi:100263696 1160.59