Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2398 ATGGGGAGGAAGCGAAAGCTCACGCCAAAACCTGCTGAATCCGTTGAACCCCCATTGAAGCAACAGCATCAACAGCAGCAGCAGCAGGAATATGAACCAGAAGCAGAGCAAACTGTTGAAGACCAAGATAACGGAGCCGAGTATGAGGAAGTTGAAGTGGAAGAAGAGGAGGAGGTAGAAGAAGAGGAAGAGGAGGAACAAGAACCAGAAGGAGCCGGAGATGATAGCGCTATTCCCGATCACTCCCAAAATGCGAATGACCTGGCATCTAAGCCCCATTCAACATCCGCGGCTGCAACATCAGTAACCGGTCCACATGGAAAGGACGACGATGACGACGAGCCGATACATAAGCTTCTGGAACCGTTCAGCAAGGAACAAATTTTAAATCTGCTGTACGAAGCGGCGAATAAACATCGCGATGTAGCGGATCGGATCCGCAAGGTGGCTGACGAGGACCCCGTACATCGAAAAATCTTCGTACACGGCCTCGGATGGGACACAAACGCTGATACCCTCATCAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGCAAGGCTGTATGTGACAAGGTATCCGGTAAATCCAAGGGGTATGGCTTTATCCTCTTCAAATCGCGTCGTGGAGCTCGCAATGCGCTGAAGCAACCGCAGAAGAAGATCGGGAATCGAATGACGGCCTGTCAGCTGGCTTCGATTGGCCCGGTTCAACAGCCAGTTGCTGCACAATCAACCCCGACACAACCGGTATCAGAGTATACCCAAAGGAAGATTTACGTTAGCAATGTTGCGGCCGATTTAGATCCTCAGAAATTGCATGTCTTTTTTTCGAAGTTTGGGGAGATCGAGGAAGGACCATTAGGGCTTGATAAGCTGACTGGGAAACCAAAAGGGTTCTGCTTGTTTGTGTACAAGAGCATTGAGAGTGCCAGAAAGGCATTGGAAGAGCCTCATAAGGAATTTGAGGGCCATATGTTGCACTGTCAGAAGGCAATAGATGGTCCAAAGCCGGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGAGACCACTTCATATGTTGGTGGGGCTGCTACCGGGCAAGGGCATCTGATGGCACCGGCGGGACCTGGTATGGGATTTAACCAGCAGGCGGCTGCACAGACGCTAAGCCCAGCCCTCGGGCAGGCTTTGACAGCACTGCTTGCAACTCAAGGGGCTGGATTGGGGCTGACCAATTTATTGGGAACTCTAGGACCAGCTGCTACAGTAAACCCGGCTGTTCCTTCTGCAGGCCATGGAATGCAGGGTGGTTACAGTAACCAACCAAATATAAGCTCGGGTGTCATTGGTGGATATGGAAATCAAAGTGGTTTACAGGGGACATATCCGAACCAGCAGGCCGGACAAAGTGGTTCTGGAAGAGGGCAGCATGGTGTTGGCCAATATGGTGGCGTTGCCCCTTACATGGGGCACTAG 1485 0.5071 MGRKRKLTPKPAESVEPPLKQQHQQQQQQEYEPEAEQTVEDQDNGAEYEEVEVEEEEEVEEEEEEEQEPEGAGDDSAIPDHSQNANDLASKPHSTSAAATSVTGPHGKDDDDDEPIHKLLEPFSKEQILNLLYEAANKHRDVADRIRKVADEDPVHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVQQPVAAQSTPTQPVSEYTQRKIYVSNVAADLDPQKLHVFFSKFGEIEEGPLGLDKLTGKPKGFCLFVYKSIESARKALEEPHKEFEGHMLHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNETTSYVGGAATGQGHLMAPAGPGMGFNQQAAAQTLSPALGQALTALLATQGAGLGLTNLLGTLGPAATVNPAVPSAGHGMQGGYSNQPNISSGVIGGYGNQSGLQGTYPNQQAGQSGSGRGQHGVGQYGGVAPYMGH 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2398 494 MobiDBLite consensus disorder prediction 34 73 - -
Prci3g2398 494 Gene3D - 243 371 IPR012677 -
Prci3g2398 494 SMART rrm1_1 158 230 IPR000504 GO:0003723
Prci3g2398 494 SMART rrm1_1 258 330 IPR000504 GO:0003723
Prci3g2398 494 MobiDBLite consensus disorder prediction 1 116 - -
Prci3g2398 494 SUPERFAMILY RNA-binding domain, RBD 239 355 IPR035979 GO:0003676
Prci3g2398 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 333 IPR000504 GO:0003723
Prci3g2398 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Prci3g2398 494 Coils Coil 45 68 - -
Prci3g2398 494 MobiDBLite consensus disorder prediction 341 355 - -
Prci3g2398 494 Gene3D - 135 242 IPR012677 -
Prci3g2398 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 327 IPR000504 GO:0003723
Prci3g2398 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 225 IPR000504 GO:0003723
Prci3g2398 494 MobiDBLite consensus disorder prediction 332 355 - -
Prci3g2398 494 SUPERFAMILY RNA-binding domain, RBD 149 238 IPR035979 GO:0003676
Prci3g2398 494 MobiDBLite consensus disorder prediction 458 479 - -
Prci3g2398 494 MobiDBLite consensus disorder prediction 79 102 - -
Prci3g2398 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 31 334 - -
Prci3g2398 494 MobiDBLite consensus disorder prediction 458 494 - -
Prci3g2398 494 FunFam UBP1-associated protein 2A 150 234 - -
Prci3g2398 494 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2398 Prci-Chr3 37294637 37297242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2398 256 374 C2H2 Transcription Factor Family AT2G19380 31.148 1.01e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2398 K12741 - qsa:O6P43_006267 607.831