Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2388 ATGGGGAGCAGAAAGGAAGATGAGAGAAATGAGAAGATTATTAGAGGTCTTATGAAGCTTCCGCCTAATCGAAGATGTATCAACTGCAATAGCCTGGGTCCGCAATACGTCTGTACGACTTTTTGGACCTTCGTTTGCATGACATGCAGTGGGATACATCGTGAGTTTACTCATCGAGTTAAGTCTGTATCAATGGCAAAGTTCACTTCTCAGGAAGTAGAAGCTCTTCAAAATGGTGGCAACCAGCGCGCAAGGGATACATATTTGAAAGACTGGGATTTCCAAAGGCAGCGTATGCCAGATAGCAGCAATGCTGACAAAATAAGGGAGTTTATAAGGAATGTGTACGTTGATAGAAGATATGCTGGAGCAAGGTCTGCTGACAAGCCTCCAAGAGATACGCAGAGCCCTAGAATCCATGGAGAGGACACAAGGCGTGCAAGCTCATATCATTCATATTCTCAAAGCCCTCCATATGATTATCAATATGAAGATCGACGGTATGGAAGACAAGCAGCTGCATTAACCAGGAAGCCTGGTTCGGATAAAGGTCGCTATGAGGGGAAGATGTCTAGTATTATGTATAGTCCTGGGCGCTTCAGTGACCATGCATCTGATGAGGGCTTTGCTAATGAGGGATCTGGTCCAAGAAATTCAGACTATTCTGTATCTGGTGCTGGTGAACAATTGAAATCTGTTGTGCAGTCTCCTAAGTTTTATAAAGACATGCGAAGCAGTCCATTCCATCAGCGTTCTAGTGCCGGTTCAAGTGAAGATGTATGGTCTCCATCACGGTATACATCTCTGGAAACAATTGTCAAGGGTGATTCAGATGGACATCATCCACAGTGTGCCAGGCCAATATCACAACAATCTTGTCCAGCAAGATCAGTTAGCTTGGATCTTTCAAAGGCACCAGTGGCATCTGAGCCATTATCTTCCTTAAAGCCACCTGTTGATCTTTTTGAGTTTCCAGCATCATCTCAGGCTCCATCAATGGATTTGTTTCAACCATCTATTTTGTCTTCGGCTCCATCTTCAAACAAAAATCAACCTTCACAAACATCCCAGTCCTCATCTATTGACTTCTTTGCGGATGTTTCCGAGCAGCAGCCTGCAGCTACATCAGATGAGAAGTCTCCAGAGTTCTTTGTCCCTAAAAATGAAGGATGGGCAACATTTGATCTCCCTCAGCACACAGCATCTCCTGCACAAGTTGAAATTCCAGCAGGAGTTCCGTCAACTGACAAGTCTTTGATGGAATTATTTGATCCATTTTCAACTGCAAATACTAGCACGCAGTGGCCATCTTTTGACACTTCTGGTGTTCATGACCCTTCAATCACTTATAATGCTTGGCGTGGTGGTGTGCAAAATGGAGAACAAGCTTCCATTGCTCCAGCAAATGCTCAATCATGGAATGCATTTGAAGATCCTGGTTCCCACCTTCCTGTAGATGCTGTTAATCAAGGGTCGCTACTACATAATCTTCCATCAAGTGATGATCAATTTTTGAGCTCAAAAGTTTCTGAGGGCTCCAAAGGTGGGGTGCAAGAATTTGCCCCTCTTGGTGGATTTAATGATAACATTCAATCAGATGCTAGTGGTTTACCATATCCTCCAACCGTCCTTCCTCTCAAGGAAGAGACTCAACACAATGCAACCAATCAGAAATCAACTAATCCGTTTGATCTTCCCTATGAATCTGATGCAGAGCACAACAATATGTTCCTTGATTTGAGCTCACTGCAAGCTGCTCTGCCAGATTCGCAGTTGGCTCCCCCATACCATGGTGGTTACCATGGTGGTATAGCTGAACCATGGCTCCCGCAAAGTGTGACCCCATTTATTTCTTCTGCAGGACAAGGTGGTCTAACATTCATGGCTGCACAGCCCCCAAGTTCTCAAATACCGAACATCCAGACGCAAGGACCAGTTGCATCCTTTGGGGGCAATCCTTTTGCATAG 1968 0.4461 MGSRKEDERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVEALQNGGNQRARDTYLKDWDFQRQRMPDSSNADKIREFIRNVYVDRRYAGARSADKPPRDTQSPRIHGEDTRRASSYHSYSQSPPYDYQYEDRRYGRQAAALTRKPGSDKGRYEGKMSSIMYSPGRFSDHASDEGFANEGSGPRNSDYSVSGAGEQLKSVVQSPKFYKDMRSSPFHQRSSAGSSEDVWSPSRYTSLETIVKGDSDGHHPQCARPISQQSCPARSVSLDLSKAPVASEPLSSLKPPVDLFEFPASSQAPSMDLFQPSILSSAPSSNKNQPSQTSQSSSIDFFADVSEQQPAATSDEKSPEFFVPKNEGWATFDLPQHTASPAQVEIPAGVPSTDKSLMELFDPFSTANTSTQWPSFDTSGVHDPSITYNAWRGGVQNGEQASIAPANAQSWNAFEDPGSHLPVDAVNQGSLLHNLPSSDDQFLSSKVSEGSKGGVQEFAPLGGFNDNIQSDASGLPYPPTVLPLKEETQHNATNQKSTNPFDLPYESDAEHNNMFLDLSSLQAALPDSQLAPPYHGGYHGGIAEPWLPQSVTPFISSAGQGGLTFMAAQPPSSQIPNIQTQGPVASFGGNPFA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2388 655 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Prci3g2388 655 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Prci3g2388 655 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Prci3g2388 655 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Prci3g2388 655 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Prci3g2388 655 CDD ArfGap_AGFG 11 121 - -
Prci3g2388 655 MobiDBLite consensus disorder prediction 338 360 - -
Prci3g2388 655 MobiDBLite consensus disorder prediction 122 147 - -
Prci3g2388 655 PANTHER ARFGAP/RECO-RELATED 1 655 IPR044820 GO:0005096
Prci3g2388 655 MobiDBLite consensus disorder prediction 197 224 - -
Prci3g2388 655 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Prci3g2388 655 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Prci3g2388 655 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Prci3g2388 655 MobiDBLite consensus disorder prediction 122 162 - -
Prci3g2388 655 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2388 Prci-Chr3 37232304 37239552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2388 14 137 C2H2 Transcription Factor Family AT3G07940 29.104 1.61e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2388 K15044 - gmx:100794964 787.334