Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2356 ATGCACTCGCCGAACCGGAGCATTTTGGTCTCTCCCTCTTGCTCCCGGTCGGTGACGGAGACCGTGAATGGTTCGCACAACTTCGTAATTAGAGGCTACTCTCTTGCCAAAGGGATCGGCATTGGCAAGCATTTAGCCAGCGAGAATTTCACGGTCGGAGGGTACCAGTGGGCTATATATTTCTATCCTGATGGCAAGAATCCCGAAGATAATTCTGCGTATGTTTCGGTCTTCATTGCGCTTGCGAGCGAGGGTACTGATGTACGAGCACTGTTCGAGCTGACTTTGGTGGATCAAAGCGGAAATGGAAAGCATAAAGTTCATAGCCACTTCGATCGGTCGCTTGAGAGCGGACCCTATACTCTCAAATACAGAGGCAGCATGTGCATACAGGTTCCTGAATCTGATATTGGAGCACATCTTGGCATGCTATTAGAGAATGAGGAAGAAGCAGATGTCATTTTCTCTGTTTCTGGGGAAAAATTTCGTGCACATAAGCTTGTATTGGCTGCTCGGTCTACTGTATTTGAGACTGAACTTTTCAACAGGATGGAGGAAGATAATCAAGAGATAGTTGTTACTGACATGAAACCAAAGGTTTTCAAGGCATTGCTTCACTTTATTTATAAAGACACACTTATAGAAGATGAAGAGCTCTTTCTGTCACAATCATCTTTCTTGCCAGCAGTATCTGACACATTTGCTGCAAAATTGTTAGCTGCTGCGGAAAAGTATGATTTGCCAAGACTTAAACTGATGTGCGAATCTGTACTTTGCAAAGACATATCTGTAGATTCTGTTTCTTATATGCTGGCCCTTGCTGATCGTTATCATGCTACAGAGCTGAAGTCCATATGTCTAAAATTTTCTGCTGAGAACCTTGTTGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAGGACTGTCCATTGCTACAATCAGAACTGCTAAAGACAGTAGCAGGGTGTGGGGAAGAATTTAGCGGAGAAGGAAAATGCCGAAGTGTGTGGGCCCGATTTTCTGATGGTGCAGATACAAATGATAAAAGTGTGAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAATCAAGGTCTATGGGTTCAGCTTTCTGATGGTGTTAACAATAACGATGGGAGTCCAGGGCAAGAAGGTTGA 1161 0.4384 MHSPNRSILVSPSCSRSVTETVNGSHNFVIRGYSLAKGIGIGKHLASENFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMCIQVPESDIGAHLGMLLENEEEADVIFSVSGEKFRAHKLVLAARSTVFETELFNRMEEDNQEIVVTDMKPKVFKALLHFIYKDTLIEDEELFLSQSSFLPAVSDTFAAKLLAAAEKYDLPRLKLMCESVLCKDISVDSVSYMLALADRYHATELKSICLKFSAENLVAVMQSDGFEYLKEDCPLLQSELLKTVAGCGEEFSGEGKCRSVWARFSDGADTNDKSVRQQTWENGVERNQGLWVQLSDGVNNNDGSPGQEG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2356 386 CDD BACK_AtBPM-like 259 320 IPR034090 -
Prci3g2356 386 CDD BTB_POZ_BPM_plant 137 259 - -
Prci3g2356 386 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 15 318 IPR045005 GO:0016567
Prci3g2356 386 CDD MATH 24 119 IPR002083 GO:0005515
Prci3g2356 386 ProSiteProfiles MATH/TRAF domain profile. 23 102 IPR002083 GO:0005515
Prci3g2356 386 FunFam BTB-POZ and math domain 1 127 256 - -
Prci3g2356 386 Pfam BTB/POZ domain 143 260 IPR000210 GO:0005515
Prci3g2356 386 Gene3D Potassium Channel Kv1.1; Chain A 128 256 IPR011333 -
Prci3g2356 386 ProSiteProfiles BTB domain profile. 151 217 IPR000210 GO:0005515
Prci3g2356 386 SUPERFAMILY POZ domain 128 260 IPR011333 -
Prci3g2356 386 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 127 IPR008974 GO:0005515
Prci3g2356 386 Gene3D - 261 331 - -
Prci3g2356 386 SMART BTB_4 151 262 IPR000210 GO:0005515
Prci3g2356 386 SUPERFAMILY TRAF domain-like 20 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2356 Prci-Chr3 36979096 36987720 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Prci3g2356 BTB 1.5e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2356 K10523 - gmx:100809683 655.595