Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2292 ATGGATGTTTGCCGGAATGCATCAGTTTCCGGCGACTGCGACCAAGAGCAGGTCCTCTTGTCTTCCTGCTCAAAGCTTTCTACCTTCTCAACCACTCTTGACGACCTCTTCTCTTCTCATAGCACGGAAGTAGATGTTGGCTTAGAATGGCTTTCTGTATTTGTGGAAGACTGCTTTTCCAGCTCAGCATGTTGCCTCTTGGGATCTACTGACGCCCAAAATACAGAGGCAAACTCTAAACCCTCCGTACAATTACAGAGAACCCAGCAAAAGCAGTCTCCTCTGCAAAATTTTGTGGTTCCAGGGAAGGCAAGAAGCAAGAGGAAAAGGCTTTCAGCCCCTAGAACCAAGGACCCATTAAGCAGCTGGTCACGCCATTTGAACCCACAAAATGAACCCCTAACTTCAGACCCTCCTCTTCTTAAACAAGCCTACTGGTTAGCTGATAGTGAACTCATAGTCCCCAAGAAGGAAGATGAGCATGTAGCAACAAAGGATGGAGAAACAGAGCAAGAGGTGGAAGAGAAGAGGACTGTGAGGAAGAAGGAGAGTTTTGAGAGCTTAGTGTCAGAGTGTGAAGAAGGTAGCAATGGGCAGCAACAAATGCCAAGAAGGTGCACACATTGCCTTGCACAGAGGACCCCACAATGGAGGACCGGACCTTTGGGTCCAAAAACACTATGTAATGCATGTGGAGTGAGGTACAAGTCGGGTAGATTGCTTCCAGAATATAGGCCAGCCAAGAGTCCCACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAAAAGGTCATGGAGATGAGAATGGCTGTTCTGTCTCCGGTTCCTAATGAAGACTAA 840 0.4738 MDVCRNASVSGDCDQEQVLLSSCSKLSTFSTTLDDLFSSHSTEVDVGLEWLSVFVEDCFSSSACCLLGSTDAQNTEANSKPSVQLQRTQQKQSPLQNFVVPGKARSKRKRLSAPRTKDPLSSWSRHLNPQNEPLTSDPPLLKQAYWLADSELIVPKKEDEHVATKDGETEQEVEEKRTVRKKESFESLVSECEEGSNGQQQMPRRCTHCLAQRTPQWRTGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSPVPNED 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2292 279 SMART GATA_3 200 254 IPR000679 GO:0006355|GO:0043565
Prci3g2292 279 Gene3D - 196 267 IPR013088 GO:0006355|GO:0008270
Prci3g2292 279 MobiDBLite consensus disorder prediction 75 138 - -
Prci3g2292 279 FunFam GATA transcription factor 196 275 - -
Prci3g2292 279 ProSiteProfiles GATA-type zinc finger domain profile. 200 236 IPR000679 GO:0006355|GO:0043565
Prci3g2292 279 ProSitePatterns GATA-type zinc finger domain. 206 231 IPR000679 GO:0006355|GO:0043565
Prci3g2292 279 MobiDBLite consensus disorder prediction 75 99 - -
Prci3g2292 279 Pfam GATA zinc finger 206 240 IPR000679 GO:0006355|GO:0043565
Prci3g2292 279 PANTHER GATA TRANSCRIPTION FACTOR 12 272 - -
Prci3g2292 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 264 - -
Prci3g2292 279 MobiDBLite consensus disorder prediction 117 137 - -
Prci3g2292 279 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2292 Prci-Chr3 36602936 36604391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2292 21 268 C2C2-Gata Transcription Factor Family AT4G32890 39.844 1.30e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci3g2292 GATA 3.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2292 - - pcin:129284700 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g3611 1 52891697 52893386 Prci3g2292 3 36602936 36604391 CCT