LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g2234	ATGGGTTGCCTGGACACTGATCAGGATAACCCATCTCAAAGTTCAGCGCTGGCAACTGATGGTGATGCACCCACTGATGCAGGAGATGATGTCAAATTGAGTTCTAGGGACCAAAGAGAAGCTCTACCAGGTGAGCCCAAGTGTGTCCTATGTGGCCGCTATGGTGAGTACATATGTGATGAAACGGATGACGATGTGTGCAGCTTGGAATGTAAACAGAAACTACTACGCAGAACTGACCCATGTCCTACTGTCACTCGTTCGTCTAAGATTGTTGCTGCAACTGATGAGTGCTTTTATGTTAGAGAGAATGATTATGAATCAGGTACTTCATCTAGAGATGACGCTGATATGCTTAGAAAGAAACTCAACATTAATGTGAAGGGTGATGTAGTAGGACCAATATTGTCATTCACGGGTTGCAACCTTCCTGATAAGCTCCTCCACAATATAGAAGCTGCAGGATATGACGTGCCCACACCTGTCCAGATGCAGGCAATCCCAAATGCTTTGATAGGCAAAAGCATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTTTAATTCCAATAGTTTCTCATTGTGCAAGGCATCGTCTTGAGCATGTTTCTGATAAGAAGACGCCATTAGCTATAGTGTTAACACCTACGAGAGAGCTCTGTATTCAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGATTACCTTTTAAAACTGCACTTGTGGTTGGTGGTGATGCCATGGCTAGGCAGCTCTATCGCATTCAACAAGGAGTAGAACTGATAGTAGGAACTCCGGGAAGGCTGGTTGATCTTTTAACAAAGCATGAGATTGACTTGGATGATATGACGACATTTGTTGTAGATGAGGTGGACTGCATGCTGGAAAGGGGTTTCCGTGATCAGGTCATGCAGATATATAGGGCTATGGCCCAGCCTCAGGTCTTGATGTATTCTGCAACAATCTCTCATGAGTTAGAGAAGATGGCAAACTCTCTGGCAAAAGATACTGTGGTTATATCTGTTGGTGAGCCTAATAGACCAAATAAGGCTGTGAAGCAACTAGCTATTTGGGTTGAGTCAAAGCAGAAGAAGCAGAAACTGTTTGACATTTTGGTTAGTAAGCAGCATTTTAAGCCACCTGTGGTTGTGTATGTGGGGTCTAGACTTGGGGCAGATCTTCTGGCCAATGCCATTACAGTCACCACTGGAATTAAAGCGCTGTCAATTCACGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGAGGTTCTTTTTAGTAGGTGAGGTTCCAGTGGTTGTGGCGACTGGAGTTTTGGGTAGTGGGGTTGATCTAGTAGGCGTAAGACAGGTAATTGTGTTTGACATGCCTAATTCAATTAAGGAGTATGTACATCAGATTGGAAGGGCGTCTAGAATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATGAGGAAAATAAGAATGTCTTTGCAGAGTTGACTGAAGTCTTAAAATCTACCGGAGCAGCTGTGCCTCGGGAGCTTGTCAACTCACGATATACCAAGGGATTTTTCTCCGGTGGCAAAGGTTTACTAGCTGAGGATCATTGTGAAATTGGCTTTAGGCGTTAG	1626	0.4403	MGCLDTDQDNPSQSSALATDGDAPTDAGDDVKLSSRDQREALPGEPKCVLCGRYGEYICDETDDDVCSLECKQKLLRRTDPCPTVTRSSKIVAATDECFYVRENDYESGTSSRDDADMLRKKLNINVKGDVVGPILSFTGCNLPDKLLHNIEAAGYDVPTPVQMQAIPNALIGKSMLVLADTGSGKSASFLIPIVSHCARHRLEHVSDKKTPLAIVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMARQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDMTTFVVDEVDCMLERGFRDQVMQIYRAMAQPQVLMYSATISHELEKMANSLAKDTVVISVGEPNRPNKAVKQLAIWVESKQKKQKLFDILVSKQHFKPPVVVYVGSRLGADLLANAITVTTGIKALSIHGEKSMKERREIMRFFLVGEVPVVVATGVLGSGVDLVGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNEENKNVFAELTEVLKSTGAAVPRELVNSRYTKGFFSGGKGLLAEDHCEIGFRR	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g2234	541	Gene3D	-	102	344	IPR027417	-
	Prci3g2234	541	Pfam	DEAD/DEAH box helicase	160	331	IPR011545	GO:0003676\|GO:0005524
	Prci3g2234	541	SMART	helicmild6	396	478	IPR001650	-
	Prci3g2234	541	MobiDBLite	consensus disorder prediction	1	20	-	-
	Prci3g2234	541	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	354	517	IPR001650	-
	Prci3g2234	541	Gene3D	-	27	81	-	-
	Prci3g2234	541	MobiDBLite	consensus disorder prediction	25	39	-	-
	Prci3g2234	541	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	136	164	IPR014014	GO:0003724
	Prci3g2234	541	MobiDBLite	consensus disorder prediction	1	39	-	-
	Prci3g2234	541	SMART	ultradead3	155	358	IPR014001	-
	Prci3g2234	541	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	129	514	-	-
	Prci3g2234	541	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	167	343	IPR014001	-
	Prci3g2234	541	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	283	492	IPR027417	-
	Prci3g2234	541	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	125	345	IPR027417	-
	Prci3g2234	541	Pfam	HIT zinc finger	46	72	IPR007529	-
	Prci3g2234	541	CDD	SF2_C_DEAD	355	487	-	-
	Prci3g2234	541	Pfam	Helicase conserved C-terminal domain	369	478	IPR001650	-
	Prci3g2234	541	Gene3D	-	345	519	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g2234	Prci-Chr3	36246999	36253893	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g2234	130	510	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.202	4.08e-51	178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g2234	K19466		-	gmx:100781473	810.446