Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2203 ATGGTATTTCTCAATGGGAATGTCATTGTTGAGAGGAAAAAACATTATAGAGGAGTTAGGCAGAGACCGTGGGGGAGGGCAGCCGAAATCCGAGACCCAAACAAAGCAGCAAGAGTGTGGCTTGGCACATTTGACACGGCAGAGGATGCAGCAGCTGCTTATGACGCTGCAGCTTTGAAGTTCAAAGGCAATAAAGCCAAACTCAACTTCCCTGAACGTGTGGCTAATTTTCCGACTTATCATCACACCTCAACTGCTCCTCCTCGGCCACCGTCTGAAGTAGCGCCACCGCCAGTTTCTCAACCACCATGGCCAGCACCGTCCGGCGAGGCTGGTTTCCCAAACCTAATGCAGTATGCTCAGGTGCTTTGTAGTAGGGACGATGATGATCTACAACGAGCTGCTTCGGGTCTTTATAGTTATCATCAGAGTGTTAATGAGTCGTTTCTTTATGATTCTTCTCCATTCTTCTCATCGTCATCTGCAGTGACTTCGTCTTCTTCCACGGGGGTCTGA 516 0.4903 MVFLNGNVIVERKKHYRGVRQRPWGKXAAEIRDPNKAARVWLGTFDTAEDAAAAYDAAALKFKGNKAKLNFPERVANFPTYHHTSTAPPRPPSEVAPPPVSQPPWPAPSGEAGFPNLMQYAQVLCSRDDDDLQRAASGLYSYHQSVNESFLYDSSPFFSSSSAVTSSSSTGV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2203 172 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Prci3g2203 172 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Prci3g2203 172 CDD AP2 14 73 IPR001471 GO:0003700|GO:0006355
Prci3g2203 172 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Prci3g2203 172 FunFam Ethylene-responsive transcription factor 2 14 73 - -
Prci3g2203 172 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Prci3g2203 172 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Prci3g2203 172 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
Prci3g2203 172 PANTHER DNA-BINDING DOMAIN 12 133 IPR044808 GO:0003700|GO:0009873
Prci3g2203 172 MobiDBLite consensus disorder prediction 79 113 - -
Prci3g2203 172 MobiDBLite consensus disorder prediction 90 110 - -
Prci3g2203 172 Gene3D AP2/ERF domain 14 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2203 Prci-Chr3 36023683 36024719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2203 12 140 AP2-EREBP Transcription Factor Family AT5G13330 55.474 2.40e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci3g2203 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2203 - - pcin:129305564 265.003