Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2196 ATGAAAAGTTCACCTCACCAAAACTCCAGAGCACATTCCCAAAGTCAGTCAAGAAGACGGGCAAGTAGATCATTCCCCTCAACAGGGAAGATGGCGGGAGCAGTTTCTTCTGCTGGAGATCAGCAACGTAATAGGTTTTTAAATCCGCATGGGAGCACCTCTTCAGCAGGAAGAAAACCTCAGATGGTTAACGGTAATCACTTGCTGAACTTCCATTATGATCCCATATCTCGTCCTCAAGCAAGGGGTCCTCCTCCTCCACCACCAAGAAGGCAGCAGAAGAAAAGGCCATATAACAAAGACTTATTTTTACAGGCAAATTACAAATTTATGGTTTTAGATTCAGGAGACAATTCACCAGAGTCATTGGACCCAGATAAAATGCTACATTGGGAAGATATTGTTTGTGTGAGGTATTCCACTCCATCTGTGGTTCAGTGTCCAATTTGTTTGGAGTATCCTCTTTGTCCACAAATAACCTCTTGTGGACATATTTTTTGTTTTCCTTGTATCTTGCAATATTTGATGATGGGTGAAGAGGATAGCAAAGGTGATTGCTGGAAAAGGTGTCCCTTATGCTTTGCCATGATATCTGCAAAGGATTTATATACCATCTACATTGAAAATGTTAAGCAATTTCAAGTGGGAGATGTCATTGAGTTCAGACTTTTAACTCGGAAGAAGGACTCCTTTACTCTGTCTCATAAAAATAAACAAGAGACGGATGTCTTATCTTGTGGCAATAGTAATTTATGTGACCCATTTTCTAAGTTCACTCTCACACCAGATGTAGATCTCTCAGTGAGACAGGCAATATCGGATCTAGATGGTTGGCTAGCTAAAGCTGATTCTGGTCTTGTTGATGACTTGGAGAAACTTCCATATGTTTGTGCTGCAATGCAACAGTTAGAAGAGAGGAAGAAGTATTGGAATGAGCACAGGGCTTGTGATGTTGGAAAATCCTCTTGGCTTATTGATTGTGGACGTCAAAAACCATCAACAGTTGTAAATGGCACTGATGTTGATGATGAAACGCATTCTTACGGTTTGGGATCTTCGTCTACAAATTTCCACGACCAAAGCAAGGGTATTGTAATGGATAATTCAAATGCAAAAGCCTGCCCAGATAGAACTTTGGATGTGGAGAGAAAAGTATTAGATCAAGAAATTCATTTATCTTCTTCCTATGAGGAGAAAAATGATATTCGAAAGAATCCAAGTGGTTTTGGAGATCCAAAGGAAGGTGACTCGTACAATTTTTACCAGGCTGCTGATGGTCAGCATCTCATTCTGCATCCCCTGAACATGAAGTGTCTACTTCACCATTATAGAAGCTATGATATGCTTCCACACAGAATAAGTGGAAGGATTCTGCAATTGGAGACAGTCACTCAGTCAGAGGCAACGAGGAGGCGGTACCGATACTTGAGTCATTTTCCTTTAACAGCAACATTTCAGCTTTGTGAAATTGATTTGAATGAGATGCTGCCCCCTGAGTCCCTGGCCCCATTCATGGATGAATTGAAGAAGCGTGCAAACCAGAGGAGGCAACTTGCAAAAAAGGAACGAAAAGAGAAAAGCAAGGCTGAAGCTGCTCCTACGCATTCTATTCCCATACCAACCAGTTCTCAGCTAATGTCTCAGAACAATTCTCCTCCATTCTCGATGGATGACTTTGAAGTTTTGGGGAATTCTGCTGTATCATCAAGTCCTCCTGTTGTTATGGGGAGAAGCTTGTTTTCAAATGTTACAAGACTTGGTTTTGCCGCTGGTCATGATTCCCCATCCTTGAACTTTCAAGAAACTAATGGCCTACATAATCATAATACGACAACTGATTCTTCTGGCTTGACAGGTCTGAGAAATGTGGAGACATCATCATTTGCCAATGTTATATCTAGAGCGGAGTCAATAACTAGCTTAAATGCACCCAAGACAAGTGACTTGGGTAAGAAGGGGAAGAAACCAACTAGAGTTCTCATGTCAACAGCCGGGGGCAGGCGTTACTAA 2010 0.4159 MKSSPHQNSRAHSQSQSRRRASRSFPSTGKMAGAVSSAGDQQRNRFLNPHGSTSSAGRKPQMVNGNHLLNFHYDPISRPQARGPPPPPPRRQQKKRPYNKDLFLQANYKFMVLDSGDNSPESLDPDKMLHWEDIVCVRYSTPSVVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDSKGDCWKRCPLCFAMISAKDLYTIYIENVKQFQVGDVIEFRLLTRKKDSFTLSHKNKQETDVLSCGNSNLCDPFSKFTLTPDVDLSVRQAISDLDGWLAKADSGLVDDLEKLPYVCAAMQQLEERKKYWNEHRACDVGKSSWLIDCGRQKPSTVVNGTDVDDETHSYGLGSSSTNFHDQSKGIVMDNSNAKACPDRTLDVERKVLDQEIHLSSSYEEKNDIRKNPSGFGDPKEGDSYNFYQAADGQHLILHPLNMKCLLHHYRSYDMLPHRISGRILQLETVTQSEATRRRYRYLSHFPLTATFQLCEIDLNEMLPPESLAPFMDELKKRANQRRQLAKKERKEKSKAEAAPTHSIPIPTSSQLMSQNNSPPFSMDDFEVLGNSAVSSSPPVVMGRSLFSNVTRLGFAAGHDSPSLNFQETNGLHNHNTTTDSSGLTGLRNVETSSFANVISRAESITSLNAPKTSDLGKKGKKPTRVLMSTAGGRRY 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2196 669 ProSiteProfiles Zinc finger RING-type profile. 147 193 IPR001841 -
Prci3g2196 669 Coils Coil 505 529 - -
Prci3g2196 669 SUPERFAMILY RING/U-box 146 200 - -
Prci3g2196 669 MobiDBLite consensus disorder prediction 1 61 - -
Prci3g2196 669 MobiDBLite consensus disorder prediction 1 98 - -
Prci3g2196 669 MobiDBLite consensus disorder prediction 643 669 - -
Prci3g2196 669 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Prci3g2196 669 MobiDBLite consensus disorder prediction 396 410 - -
Prci3g2196 669 Pfam Zinc finger, C3HC4 type (RING finger) 147 193 IPR018957 GO:0046872
Prci3g2196 669 MobiDBLite consensus disorder prediction 513 531 - -
Prci3g2196 669 SMART ring_2 147 193 IPR001841 -
Prci3g2196 669 CDD RING-HC_RNF10 145 202 - -
Prci3g2196 669 FunFam RING finger protein 10 140 208 - -
Prci3g2196 669 MobiDBLite consensus disorder prediction 513 549 - -
Prci3g2196 669 PANTHER RING FINGER 10 FAMILY MEMBER 4 669 IPR039739 -
Prci3g2196 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 208 IPR013083 -
Prci3g2196 669 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2196 Prci-Chr3 35934916 35941464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2196 32 603 C3H Transcription Factor Family AT3G26730 55.782 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2196 K26979 - gmx:100798764 929.472