Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2195 ATGTCCATCTTGCCCTCGCAAGCCCAGGCATCAACCTCGTCGTCATCTCAATCTCCGATATCTCCAAACCCTAATCCGCAACATGGAAACCTCTTTCTCTCATCTTATTCTCCTCCATCGGTCCCCTCTCCCCTCCAAGTTCCATCCTTTGGATCTCTCCGGATCTCCGATTCACCATCTCCCGTCACTGTGCCCGACGTCGATTCAGGTCCATCGACTCCAGCTACAGAAGATTCTGGTGGACCTTCCGGAAAGGTGACTCAGTCGGGGTTTCCAAGTGGCATGAAAAGTTCACCTCACCAAAACTCCAGAGCACATTCCCAAAGTCAGTCAAGAAGACGGGCAAGTAGATCATTCCCCTCAACAGGGAAGATGGCGGGAGCAGTTTCTTCTGCTGGAGATCAGCAACGTAATAGGTTTTTAAATCCGCATGGGAGCACCTCTTCAGCAGGAAGAAAACCTCAGATGGTTAACGGTAATCACTTGCTGAACTTCCATTATGATCCCATATCTCGTCCTCAAGCAAGGGGTCCTCCTCCTCCACCACCAAGAAGGCAGCAGAAGAAAAGGCCATATAACAAAGACTTATTTTTACAGGCAAATTACAAATTTATGGTTTTAGATTCAGGAGACAATTCACCAGAGTCATTGGACCCAGATAAAATGCTACATTGGGAAGATATTGTTTGTGTGAGGTATTCCACTCCATCTGTGGTTCAGTGTCCAATTTGTTTGGAGTATCCTCTTTGTCCACAAATAACCTCTTGTGGACATATTTTTTGTTTTCCTTGTATCTTGCAATATTTGATGATGGGTGAAGAGGATAGCAAAGGTGATTGCTGGAAAAGGTGTCCCTTATGCTTTGCCATGATATCTGCAAAGGATTTATATACCATCTACATTGAAAATGTTAAGCAATTTCAAGTGGGAGATGTCATTGAGTTCAGACTTTTAACTCGGAAGAAGGACTCCTTTACTCTGTCTCATAAAAATAAACAAGAGACGGATGTCTTATCTTGTGGCAATAGTAATTTATGTGACCCATTTTCTAAGTTCACTCTCACACCAGATGTAGATCTCTCAGTGAGACAGGCAATATCGGATCTAGATGGTTGGCTAGCTAAAGCTGATTCTGGTCTTGTTGATGACTTGGAGAAACTTCCATATGTTTGTGCTGCAATGCAACAGTTAGAAGAGAGGAAGAAGTATTGGAATGAGCACAGGGCTTGTGATGTTGGAAAATCCTCTTGGCTTATTGATTGTGGACGTCAAAAACCATCAACAGTTGTAAATGGCACTGATGTTGATGATGAAACGCATTCTTACGGTTTGGGATCTTCGTCTACAAATTTCCACGACCAAAGCAAGGGTATTGTAATGGATAATTCAAATGCAAAAGCCTGCCCAGATAGAACTTTGGATGTGGAGAGAAAAGTATTAGATCAAGAAATTCATTTATCTTCTTCCTATGAGGAGAAAAATGATATTCGAAAGAATCCAAGTGGTTTTGGAGATCCAAAGGAAGGTGACTCGTACAATTTTTACCAGGCTGCTGATGGTCAGCATCTCATTCTGCATCCCCTGAACATGAAGTGTCTACTTCACCATTATAGAAGCTATGATATGCTTCCACACAGAATAAGTGGAAGGATTCTGCAATTGGAGACAGTCACTCAGTCAGAGGCAACGAGGAGGCGGTACCGATACTTGAGTCATTTTCCTTTAACAGCAACATTTCAGCTTTGTGAAATTGATTTGAATGAGATGCTGCCCCCTGAGTCCCTGGCCCCATTCATGGATGAATTGAAGAAGCGTGCAAACCAGAGGAGGCAACTTGCAAAAAAGGAACGAAAAGAGAAAAGCAAGGCTGAAGCTGCTCCTACGCATTCTATTCCCATACCAACCAGTTCTCAGCTAATGTCTCAGAACAATTCTCCTCCATTCTCGATGGATGACTTTGAAGTTTTGGGGAATTCTGCTGTATCATCAAGTCCTCCTGTTGTTATGGGGAGAAGCTTGTTTTCAAATGTTACAAGACTTGGTTTTGCCGCTGGTCATGATTCCCCATCCTTGAACTTTCAAGAAACTAATGGCCTACATAATCATAATACGACAACTGATTCTTCTGGCTTGACAGGTCTGAGAAATGTGGAGACATCATCATTTGCCAATGTTATATCTAGAGCGGAGTCAATAACTAGCTTAAATGCACCCAAGACAAGTGACTTGGGTAAGAAGGGGAAGAAACCAACTAGAGTTCTCATGTCAACAGCCGGGGGCAGGCGTTACTAA 2292 0.4306 MSILPSQAQASTSSSSQSPISPNPNPQHGNLFLSSYSPPSVPSPLQVPSFGSLRISDSPSPVTVPDVDSGPSTPATEDSGGPSGKVTQSGFPSGMKSSPHQNSRAHSQSQSRRRASRSFPSTGKMAGAVSSAGDQQRNRFLNPHGSTSSAGRKPQMVNGNHLLNFHYDPISRPQARGPPPPPPRRQQKKRPYNKDLFLQANYKFMVLDSGDNSPESLDPDKMLHWEDIVCVRYSTPSVVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDSKGDCWKRCPLCFAMISAKDLYTIYIENVKQFQVGDVIEFRLLTRKKDSFTLSHKNKQETDVLSCGNSNLCDPFSKFTLTPDVDLSVRQAISDLDGWLAKADSGLVDDLEKLPYVCAAMQQLEERKKYWNEHRACDVGKSSWLIDCGRQKPSTVVNGTDVDDETHSYGLGSSSTNFHDQSKGIVMDNSNAKACPDRTLDVERKVLDQEIHLSSSYEEKNDIRKNPSGFGDPKEGDSYNFYQAADGQHLILHPLNMKCLLHHYRSYDMLPHRISGRILQLETVTQSEATRRRYRYLSHFPLTATFQLCEIDLNEMLPPESLAPFMDELKKRANQRRQLAKKERKEKSKAEAAPTHSIPIPTSSQLMSQNNSPPFSMDDFEVLGNSAVSSSPPVVMGRSLFSNVTRLGFAAGHDSPSLNFQETNGLHNHNTTTDSSGLTGLRNVETSSFANVISRAESITSLNAPKTSDLGKKGKKPTRVLMSTAGGRRY 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2195 763 MobiDBLite consensus disorder prediction 607 625 - -
Prci3g2195 763 MobiDBLite consensus disorder prediction 490 510 - -
Prci3g2195 763 SUPERFAMILY RING/U-box 240 294 - -
Prci3g2195 763 MobiDBLite consensus disorder prediction 1 155 - -
Prci3g2195 763 MobiDBLite consensus disorder prediction 737 763 - -
Prci3g2195 763 MobiDBLite consensus disorder prediction 1 192 - -
Prci3g2195 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 302 IPR013083 -
Prci3g2195 763 PANTHER RING FINGER 10 FAMILY MEMBER 77 763 IPR039739 -
Prci3g2195 763 Coils Coil 599 623 - -
Prci3g2195 763 CDD RING-HC_RNF10 239 296 - -
Prci3g2195 763 MobiDBLite consensus disorder prediction 607 643 - -
Prci3g2195 763 MobiDBLite consensus disorder prediction 490 504 - -
Prci3g2195 763 FunFam RING finger protein 10 234 302 - -
Prci3g2195 763 SMART ring_2 241 287 IPR001841 -
Prci3g2195 763 Pfam Zinc finger, C3HC4 type (RING finger) 241 287 IPR018957 GO:0046872
Prci3g2195 763 ProSiteProfiles Zinc finger RING-type profile. 241 287 IPR001841 -
Prci3g2195 763 ProSitePatterns Zinc finger RING-type signature. 256 265 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2195 Prci-Chr3 35934631 35941637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2195 71 697 C3H Transcription Factor Family AT3G26730 53.727 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2195 K26979 - gmx:100798764 984.941