Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2189 ATGGAGAGACATATGCTACCAAGAGCTCCCGGCGTCCCTTGGATGGAAGAAGTTGAAGACGCAGCATCTTGGACCAGGACTAACAACGAAGGTGAGTCCAAGGACCAGGACATTGCTTTGGGAGGTCCACTAACGTCCTTCAAATCCATGCTTCAAAGTGAATGGTACATGGATTCTGCTATCAATTCATCTCATCAAGACCTCCCTGGTCTCCCAGTTCACCAAGAAACCAGAGATATTGGTTTTTGTTCGAATCCAGCTGATAGTTTCCTGTTGCTGCCTATAGATTCATCTTCTTGTTCACCTTCATTCACTACCGACCCGGCGCAGCCACAGCCATTTTTACCACCCAAATCGTGCTTCCCTTCTTTCTTCAACGCTGTTTGCAACAACCCTTTCGAGAATAATGGCTTCGATTTGGGCTCTGAAAGTGGGTTTCTCGGTCACTTCCAGGGAAATCAAACTTCAAGTTCCCATGTCCTGATGGGGTTTTCGGGTTTGGATACTCAACCACAGATGGGCAACCTCGAGCTCAGTTCAAGCACTGAATTCCCAGCAGGTCGGCTGTTGCCTGCTGCTGACAATGGCGTCGCACTTGATGGCGGATTTAGTCCGATGGGTTTAGAAATATACGATGGTTCCGGAAATGCTCTGTTTTCTGACAAGACTAAGGTTTTAAGACCACTTGATGTTTTCCCTCCAGTTGGTGCACAACCCACTCTCTTTCAGAAACGAGCCGCGCTTCGCCAAACCTCTGGCGGAGCTGATAAATTGGGCGGTTTAGAGATTTCGCCATCTAGATTCAATGATTATTCAAACGTGGAGAAAAAGAGGAAGACAGAAGAGGGCGAAATCGAAGAAGCCAGCATAGATGCGTCTGGATTGAATTATGATTCTGATGAGCTTAATGAGAATAATAAGGCGGAGGAGAATGGGAATAACGGCGGAAGCAATTCTAATGCAAATAGTACTGTTACAGGTGGAGATCAGAAGGGGAAGAAGAAGGGATTACCTGCAAAAAATCTCATGGCCGAGAGAAGGCGCAGGAAGAAACTAAATGATAGGTTATATATGCTTCGATCGGTCGTGCCGAAGATTAGTAAGATGGATAGGGCTTCCATACTAGGGGATGCAATTGACTACTTGAAGGAGCTGCTGCAGCGGATCAACGATCTTCATAATGAGCTGGAGTCAACTCCTGGTTCTCTGCCACCACCTTCTACAAACTTCAACCCTTTGACGCCCTCTCTCCCAACCCTTCCCTGCAGGGTCAAGGAAGAACTTTGCCCTAACTCTTTGCCGAGCCCTAAGAACCAACCTTCACGAGTGGAGGTTAGGTTAAGGGAAGGGAGAGCTGTGAACATCCATATGTTCTGTGCCCGCAGACCAGGTCTTCTTCTTACCACCTTGAAGGCTTTGGACAGCCTTGGACTGGACATTCAGCAGGCTGTTATCAGCTGTTTCAATGGCTTTGCTTTAGATGTGTTCCGAGCTGAGCAATGCAGGGAAGGCCAGGACGTAGCCCCCGAGCAAATTAAAGCAGTCTTGTTGGATTCAGCGGGTTGCCATGGAATGGTGTGA 1581 0.4782 MERHMLPRAPGVPWMEEVEDAASWTRTNNEGESKDQDIALGGPLTSFKSMLQSEWYMDSAINSSHQDLPGLPVHQETRDIGFCSNPADSFLLLPIDSSSCSPSFTTDPAQPQPFLPPKSCFPSFFNAVCNNPFENNGFDLGSESGFLGHFQGNQTSSSHVLMGFSGLDTQPQMGNLELSSSTEFPAGRLLPAADNGVALDGGFSPMGLEIYDGSGNALFSDKTKVLRPLDVFPPVGAQPTLFQKRAALRQTSGGADKLGGLEISPSRFNDYSNVEKKRKTEEGEIEEASIDASGLNYDSDELNENNKAEENGNNGGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPGSLPPPSTNFNPLTPSLPTLPCRVKEELCPNSLPSPKNQPSRVEVRLREGRAVNIHMFCARRPGLLLTTLKALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVAPEQIKAVLLDSAGCHGMV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2189 526 CDD bHLH_AtAMS_like 339 402 - -
Prci3g2189 526 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 183 522 - -
Prci3g2189 526 Coils Coil 379 399 - -
Prci3g2189 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 412 IPR036638 GO:0046983
Prci3g2189 526 SMART finulus 342 391 IPR011598 GO:0046983
Prci3g2189 526 Coils Coil 271 291 - -
Prci3g2189 526 Gene3D - 330 399 IPR036638 GO:0046983
Prci3g2189 526 MobiDBLite consensus disorder prediction 271 286 - -
Prci3g2189 526 MobiDBLite consensus disorder prediction 308 329 - -
Prci3g2189 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Prci3g2189 526 CDD ACT_UUR-ACR-like 455 515 - -
Prci3g2189 526 MobiDBLite consensus disorder prediction 333 349 - -
Prci3g2189 526 FunFam BHLH transcription factor 332 400 - -
Prci3g2189 526 MobiDBLite consensus disorder prediction 253 349 - -
Prci3g2189 526 Pfam Helix-loop-helix DNA-binding domain 343 385 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2189 Prci-Chr3 35902193 35905992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2189 23 499 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.694 1.38e-141 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g2189 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2189 - - pcin:129305251 734.176