Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2144 ATGGAGTGGTACCCAAAAGAGTCAGTACGGGATCCGCTGAGAGATCAGCCGAACACTGGAGAACGCCCGGTGGAGAAATCAATGTCAGCTGCGGGAGCAGAGATGTCGAATTCAAAATCATCACCGTGCGGCGGGGCATCGAAGAGGAAGCGCGTGTACCACAAGTCGCCGGAGAGGGTGAAGTGTTCGGTCGACGGATGCAACTTTGACCTGAGGAATTGCACGGAGTATCACCGGCGGCACAGGGTGTGTCAACCTCACTCCAAGACATCTCTTGTGCTGGTGAAGGGACAGGAACAGAGATTCTGCCAGCAATGCAGCAGATTTCAGTCGCTGGATGAGTTCGACGGCTTCAAGAGGAGCTGCAGGAGACGTTTAGAGGGCCATAATAAGCGCAGAAGGAAATCTCGTCCCCCACCTATTGGATTCTCTGCTCATTACAGAGGACCCAGAATGCTGAAATTTGGAAATCCCACTGCCAACGATCCTTACGCGAAGATGTGGAGTGCTCAACATGGGAGCTACCATAATCGTTACCCACCAATTCTGCCAAAGATTGAGATTGAGCAACAGAGTGTGGAAGGTCGTGCCTTTGCCAATACAGGGAAGATGAAGGAGAAGCAGGTGATCAGTGGGGATTGGTACAATAACCACACGGTGGCGCCAGAAGAAGCTGGAATGGGAAGTAGTAGGAGCCAGAAGATGATGCCTTGGGATTCTGCTCTCTATCTTCTGTCAGCACAAAGTTCGCCGGAGTTCAGTATGGTGGAGTCAAGCATAGAGTGTCCAATTCAATCGCAACCTCCATGGGAAGAACGTGTTCAATTGGAAGATGACGATGGAACTCCAAACTGTTCGTGTTCAAGGAGTGTGACCAGCGGTCCCAGATTGGGTCTGGACGGTAACGCCACCAACTTTGATCACAATGGGATGCTTCAAATGGAGCCCCAGGTGATCGGAAACGATGGAGGCTCCGCCACTTTGCCTTTTTCCTGGGAGTGA 1002 0.517 MEWYPKESVRDPLRDQPNTGERPVEKSMSAAGAEMSNSKSSPCGGASKRKRVYHKSPERVKCSVDGCNFDLRNCTEYHRRHRVCQPHSKTSLVLVKGQEQRFCQQCSRFQSLDEFDGFKRSCRRRLEGHNKRRRKSRPPPIGFSAHYRGPRMLKFGNPTANDPYAKMWSAQHGSYHNRYPPILPKIEIEQQSVEGRAFANTGKMKEKQVISGDWYNNHTVAPEEAGMGSSRSQKMMPWDSALYLLSAQSSPEFSMVESSIECPIQSQPPWEERVQLEDDDGTPNCSCSRSVTSGPRLGLDGNATNFDHNGMLQMEPQVIGNDGGSATLPFSWE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2144 333 MobiDBLite consensus disorder prediction 275 299 - -
Prci3g2144 333 MobiDBLite consensus disorder prediction 1 21 - -
Prci3g2144 333 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Prci3g2144 333 MobiDBLite consensus disorder prediction 281 299 - -
Prci3g2144 333 MobiDBLite consensus disorder prediction 1 54 - -
Prci3g2144 333 Pfam SBP domain 62 135 IPR004333 GO:0003677
Prci3g2144 333 MobiDBLite consensus disorder prediction 126 148 - -
Prci3g2144 333 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 261 IPR044817 GO:0003677
Prci3g2144 333 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677|GO:0005634
Prci3g2144 333 Gene3D - 53 123 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2144 Prci-Chr3 35426276 35428427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2144 62 204 SBP-box Gene Family AT5G50670 42.767 1.55e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci3g2144 SBP 8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2144 - - pcin:129306573 705.286