Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2049 ATGGCTCGTCTCGCAGCTTGCTTTCTTCTCCTCTCTCTCTCTCTCATTGCTTCCTGCGTCGCAGGTCAAGACCCTGAGCTAGTTGTACAAGACGTACACAGAAGCATCAATGCCTCCAGAAGAAATCTAGGGTATTTATCGTGTGGAACCGGCAATCCTATTGACGACTGTTGGAGGTGCGACCCGAACTGGGAGAGGAACCGGCAGAGGCTGGCCGATTGCGCCATCGGGTTCGGCAAGGATGCCATCGGCGGAAGAAACGGTCGAATCTATGTGGTCACTGATTCCGGCGACGATGACCCGGTAAACCCTAAGCCAGGAACTCTGAGATACGCCGTTATCCAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTGATAACTCTGAAGCAAGAGCTGGTGATGAACTCCTTCAAGACCATTGACGGAAGGGGAGCGAGTGTTCACATTGCCGGTGGGGGATGCTTAACAATACATTACGTGAGCAACATTATCATTCACGGCATTCACATTCATGACTGTAAGCCCACCGGTCATGCCGATATCAGAGACTCTCCTCGCCACTATGGGTGGTGGACAGTGTCGGACGGTGACGGAATCTCCATATTCAATTCCAGGCATGTATGGGTTGACCATTGCTCCCTCTCTAATTGCCACGACGGTCTCATCGACGCTATCCATGGATCCACTGCCATCACCATCTCCAACAACTACATGACCCACCATGATAAGGTCATGCTCTTGGGCCACAGTGATTCTTACACTCAAGACAAGAACATGCAAGCCACTATCGCCTTCAACCACTTCGGAGAAGGCCTTGTCCAGAGAATGCCAAGGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGACTATACACACTGGGAAATGTATGCGATTGGTGGGAGTGCTAATCCTACCATAAACAGCCAAGGGAATAGGTTTCTTGCACCAGACAACAGGTTTAGCAAGGAGGTGACGAAGCACGAGGATGCTTCAGAAGGAGAGTGGATGAGCTGGAATTGGAGGTCAGAAGGTGACCTGTTCTTGAATGGAGCTTACTTCAGGCAATCTGGTGCTGGTGCTTCTTCAATCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCGTCTTCTCTGGTCGGCTCCATGACCATGACTGCAGGTGTGCTTACATGCAGGAAGGGCGTCCGTTGCTGA 1203 0.5087 MARLAACFLLLSLSLIASCVAGQDPELVVQDVHRSINASRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCLTIHYVSNIIIHGIHIHDCKPTGHADIRDSPRHYGWWTVSDGDGISIFNSRHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASEGEWMSWNWRSEGDLFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTMTAGVLTCRKGVRC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2049 400 FunFam Pectate lyase 51 393 - -
Prci3g2049 400 Gene3D - 51 393 IPR012334 -
Prci3g2049 400 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Prci3g2049 400 SUPERFAMILY Pectin lyase-like 36 394 IPR011050 -
Prci3g2049 400 PANTHER PECTATE LYASE 18-RELATED 24 397 IPR045032 GO:0030570
Prci3g2049 400 Pfam Pectate lyase 132 317 IPR002022 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Prci3g2049 400 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Prci3g2049 400 SMART amb_all 126 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2049 Prci-Chr3 34776985 34778677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2049 8 400 Polysaccharide Lyase AT5G63180 76.322 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2049 K01728 - zju:107415231 731.095