Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2020 ATGTTTGCTTGGAAGTTTAACAGCGAAGGATATATACATATATATATCATGGCCTCTTCATCGAGCTACAATTCCCCATGTGCAGCCTGCAAGTTTCTGAGAAGGAAGTGCATGCCAGACTGCATATTTGCGCCATATTTCCCACCAGAAGAACCTCAGAAATTTGCCAACGTTCACAAGATATTCGGTGCAAGCAACGTGAGCAAGCTCTTGAACGAAGTGCTACCTCATCAGAGAGAGGATGCTGTGAACTCTCTGGCTTATGAAGCTGAAGCTCGGATCAAAGATCCGGTGTATGGTTGTGTCGGAGCCATCTCGGTTCTCCAGAGGCAAGTCATTAGGCTCCAAAAGGAACTAGATGCCACAAATGCTGAAATGATTCGCTATACGTGCAGTGAAATACCCACTACTCATCAAGATGGAACTAGATTATTCGGTACTGAAGGACCTGGAGGCTCGTCATCGTCTCTTCTCGGTCAGTCTCCTTCTGCTTTTTACTATCCTTCTCCTTGGAATAATGATGTTTGTGGGGATGCCTTTCACATTCACAGAGGAGCAGATAATAACATGTGA 573 0.4503 MFAWKFNSEGYIHIYIMASSSSYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNAEMIRYTCSEIPTTHQDGTRLFGTEGPGGSSSSLLGQSPSAFYYPSPWNNDVCGDAFHIHRGADNNM 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2020 190 Coils Coil 105 125 - -
Prci3g2020 190 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Prci3g2020 190 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
Prci3g2020 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2020 Prci-Chr3 34516771 34518900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2020 16 132 AS2 family AT5G63090 83.761 4.47e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci3g2020 LOB 5.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2020 - - gmx:100800167 273.092