Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2019 ATGCCAGACTGCATATTTGCGCCATATTTCCCACCAGAAGAACCTCAGAAATTTGCCAACGTTCACAAGATATTCGGTGCAAGCAACGTGAGCAAGCTCTTGAACGAAGTGCTACCTCATCAGAGAGAGGATGCTGTGAACTCTCTGGCTTATGAAGCTGAAGCTCGGATCAAAGATCCGGTGTATGGTTGTGTCGGAGCCATCTCGGTTCTCCAGAGGCAAGTCATTAGGCTCCAAAAGGAACTAGATGCCACAAATGCTGAAATGATTCGCTATACGTGCAGTGAAATACCCACTACTCATCAAGATGGAACTAGATTATTCGGTACTGAAGGACCTGGAGGCTCGTCATCGTCTCTTCTCGGTCAGTCTCCTTCTGCTTTTTACTATCCTTCTCCTTGGAATAATGATGTTTGTGGGGATGCCTTTCACATTCACAGAGGAGCAGATAATAACATGTGA 462 0.4589 MPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNAEMIRYTCSEIPTTHQDGTRLFGTEGPGGSSSSLLGQSPSAFYYPSPWNNDVCGDAFHIHRGADNNM 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2019 153 Coils Coil 68 88 - -
Prci3g2019 153 ProSiteProfiles LOB domain profile. 1 89 IPR004883 -
Prci3g2019 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 99 - -
Prci3g2019 153 Pfam Lateral organ boundaries (LOB) domain 2 85 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2019 Prci-Chr3 34516771 34518903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2019 3 106 AS2 family AT3G27650 77.143 3.01e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci3g2019 LOB 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2019 - - gmx:100800167 234.958