Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2018 ATGGCCTCTTCATCGAGCTACAATTCCCCATGTGCAGCCTGCAAGTTTCTGAGAAGGAAGTGCATGCCAGACTGCATATTTGCGCCATATTTCCCACCAGAAGAACCTCAGAAATTTGCCAACGTTCACAAGATATTCGGTGCAAGCAACGTGAGCAAGCTCTTGAACGAAGTGCTACCTCATCAGAGAGAGGATGCTGTGAACTCTCTGGCTTATGAAGCTGAAGCTCGGATCAAAGATCCGGTGTATGGTTGTGTCGGAGCCATCTCGGTTCTCCAGAGGCAAGTCATTAGGCTCCAAAAGGAACTAGATGCCACAAATGCTGAAATGATTCGCTATACGTGCAGTGAAATACCCACTACTCATCAAGATGGAACTAGATTATTCGGTACTGAAGGACCTGGAGGCTCGTCATCGTCTCTTCTCGGTCAGTCTCCTTCTGCTTTTTACTATCCTTCTCCTTGGAATAATGATGTTTGTGGGGATGCCTTTCACATTCACAGAGGAGCAGATAATAACATGTGA 525 0.4648 MASSSSYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNAEMIRYTCSEIPTTHQDGTRLFGTEGPGGSSSSLLGQSPSAFYYPSPWNNDVCGDAFHIHRGADNNM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2018 174 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Prci3g2018 174 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Prci3g2018 174 Coils Coil 89 109 - -
Prci3g2018 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2018 Prci-Chr3 34516771 34519238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2018 1 116 AS2 family AT5G63090 86.325 2.16e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci3g2018 LOB 4.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2018 - - gmx:100800167 273.092