Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1988 ATGATGGAACTCACCGATTCCGGCAACGAACTCAGGGACCACAAGCTGACTCAAGATTCTCGCTCTGGACTGGGAATCGACCTCAATGAGATCCCCTCTCCTTCTTTTGCCGAAACCCTACCGGACTCCATCGACATCGTACGCGCGTATCACGAGAACCCGGCGCCTCCGCCCGGCGGTCCGGCGGGGATTCCCGGTGACGTCCGCGGCTCCACTTGCGGTGCCTGTGGCAAGCCCGAGGCGCGGGGTCATGTTGTGGTCTGCGACGGGTGCGAGCGCGGCTACCATCTGGGCTGCGCGGGAATGCGTGGGCGACAGGCCATAAACCTTGACGAATGGGTTTGTGGAGAGTGTGTTTCCAGTGGGGTGAAGAGTAAGCGTTGGCCATTGGGTGTCAAGTCCAAACATCTTTTAGATATCAATGCTTCGCCACCCAGCGATGCTGACGGCGAGGGTAGTGAAGAATTGCAGGATTTAAGAATGCACAATGAGGGTCATAATTCTTTCAGTGCCAACTCATTTGGCACCGCATTGACATATTCAAACTTCTACAATGGTAATGCTATTGGCTTCCAAAAAGCATCTGGAGTTGTGACACATGCTGTTAGAGTGGGTTTTGAGGACGTATTGAATCATACACAATCAGTAACTAGAAATTATGAGGAGGTAGATATGGGTTTGCCTCCTGGAAGTCATAGGAATGTTAAAAATACAGCCGCTGGGAATCCAGGAGAGTTAATTTTGCAAGCTCTCAGAGATTTTATATCTGAAAGGCATGGTGTTCTGGAGGAAGGTTGGAAAGTGGAGTTTAGACAACCAATGAGCAGCTCTGAGCTGTATGCTGTTTACTGTGCACCAGATGGAAAGATTTTTGATTCTGTGTTTGAAGTAGCGTGTTATCTAGGGCTAATGCCTGGCTACAACTCCCTGGAGTCTGAAACCAGAAATGACAGGCCTGTCTCTTCATCAGGTGGGTCTCATTTAACCAGAAAAAGAAAGTCAGCTAGGCTTCCAGTCGCTAATGGATTTGCTGAAAGAAGGGAAAACTTTACCAATAGTTGTTTTAAAGATCCTCCTTCGGATGCTGCAAGTGCAGAGTGTGCTAATGCATGTGGGAACATATCAGAAGCCACAGTAAGCGGAAGGAAAGAGGATGATCACTCTTGCCCTCAGCAATCTGCTGATGGCCTTCCTTTACAGTTTGAAGATTTTTTTGTTCTTTCTTTGGGAAAGGTTGATGATAGACCTTCTTATTGTGATGCTAACATTATTTGGCCCGTAGGTTATAAATCTTGCTGGCATGATAAAATTACAGGCTCCATTTTTACATGTGAAATTCTGGATGGTGGTGATTCTGGTCCTATATTCAGGATCAGACGGTGTTCCTGTTCTGATTTTTCTATTCCAGTTGGGTCAACTATCCTCTCAATGTCTAACCTTTGTCAATTTGTTAGTCGAACTAATGAAGATGAGGGAAAGATGAATGATAATATGGAATGTGATGGTGATGAAAGTATCCAGATGATCCTAGTTGACCCTTGCAATCCAACAGAAAATGATGTATTGAGCTGTCTTGAAAGTTTCTCTGGTGAAGCACATGATAGCCATACATTAGATGTATTGCAGCCTGCCGCTGGTCCAGTTCAAGATGAAACTCATAATTTATCTGACAACTTGGGTTCAGTTGGTGAGATTGTGGTGGAAGAGTGTTCGTCATCCTCAGCATGGAAAGATATTTCTCAAAAATTAGTTAATGCTTGCAGTGAAATATGCAGGCAGAAAGGGACTCTAAAGCTCTATTGTAAACACGTTGAAAATGAAATGTATGTACATAAATGGGACATAAGGAATGACAAAAATGAACCCACTTCATTTGGTAAATTTTGTGGGTCCCCTGTTCTTGGTATCCCTGCCATGGTTCATGCAGATAATGATCTTGAAAGTTTGTATGAGGTCTTAAGAAAATGGTTGGAGCAAGATAGATTTGGGTTAGATGTTGAGTTTGTCCAAGAAGTACTCGAACTACTTCCTGGTGTTGAAGGATTTTCACGGTATGAATTTCTGGATGCTAGAAGTAATAGCTCCTCGTTGCCAACAGTTGGAAATGGGTTCTTGGTTGCTGATTGGAGGGATAGATCCCAATATCAGGATGAAACAGTGCAAGGTTTATATAGGAGACACAAGAAAATAAAATTGTTCAGGGAATGTGAAGAAGATCATTGTCCACCTCCTGGGAAGCCACTATCCTCTAGGGTTCCTTTTGAACTTGTTGGTGATGTTCTTCAGGTTTGGGAACTATTACACAGATTTCATGAAATTTTGGGCCTGAAGGAACCTTTGTCATTGGATGAGCTGGAGAAGGAACTCATCAACCCATGGTTTAATAGATCAGTCTTTAATGAAAAACTTGAGAGTGATGGCTGTGGTGGACCAATGTTATCCCCAAACTGTGAAGCTGCTCCTTCAGTTTCTGCTGGAAGTCCCCATGCATTTATTCAAGTGGAAACTGAAGCCATGAAAGAGGCAGCTCAAGTTAAGCTTGCATTGTTCACTTACACCACATGCTTTGGTGCTTCTTTGACCAAGGCTCATAATTCCTTGCTGGAGGTTTTAATAGGTGAACTGCAATCCAAAGTGGCTGCCCTGGTGGATCCAAATTTTGATCCTGGAGAGCTCAGAACAAAACGTGGAAGAAGAAAAGATGCAGATAGCACTGTTCCTGCCCGACGAGCCAAGCTTAATATGCTTCCTATTAATGAACTAACTTGGCCTGAATTGGCTCGTAGATACATATTAGCTGTCTTATCAATGGATGGTAACCTTGACTCACCAGAGATTACTGCACGAGAAAGTGGTAAAGTATTTCGCTGCTTACAAGGTGATGGTGGTTTGCTGTGTGGCTCCCTTACTGGTGTGGCTGGGATGGAAGCAGATGCATTGTTGCTTGCGGAGGCTACGAAGAAAATTTTTGGTTCTGTGACTGGTGAAAGTGATGTACTTACCTTTGAAGATGAGGAGTTAGATGCAAAGGATGCTTGTGAGAAAACTTCAGTGAATGATGGTAGTATTCCAGAATGGGCACAGCTGCTAGAGCCTGTAAGAAAACTACCAACAAATGTGGGAACCAGAATCAGAAAGTGTGTCAATGATGCCTTACTTAAGGATCCTCCAGAGTGGGCTAGGAAAATACTGCTACACTCAATTAGTAAGGAAGTGTACAAGGGCAATGCATCTGGACCTACAAAGAAAGCAGTTCTTTCTGTGTTGGCTGATGTATGTGGTGAAGGATCGCAACAGAAGCCCAATAAAGGAAGGAGAAAAAAGACCGTAATATCTATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGCCGTGCTGCTGCTGCAGATGATTCCAAGGTTTTTTGCAATTTGCTGGGACGAAAATTGATAAATTCTTCTGATAATGATGATGAAGGGCTTCTTGGATCTCCAGCCATGGTGTCTCGTCCTCTTGACTTCAGGACCATTGACCTACGACTGGCTGCTGGGGCTTATGGTGGATCTCATGAAGCATTTCTTGAGGATGTTCATGAGCTGTGGAACAATGTTCGTATTGCTTTTGGAGATCAACCTGATTTAGTTGAGCTGGCTGATAAATTATCTGAGAATTTTGAATTGTTGTATAATAGTGAGGTTTTAACTTATGTTCAAAGGTTTGGAGAGTATGCCAAATTGGGAAACTTAAGTGCGGAAATGAGAAAAGAAGTGGAAAGTTTTCTTGCATCAACTAGTGAAATTCCAAAGGCCCCTTGGGATGATGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTTTGCTATGTGATACCTGTGATGCTGAGTATCATACTTACTGCTTGAATCCTCCGCTAGCAAGGATTCCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGACAGTAAACATGTAGTTCAAGATGTTTCACAATGTTCAAAACTTGTTGGAAAACCTAGAAGTAAGAAATTCAAGGGGGAGGTGACTTCGCTTTACTTGGAGGCTCTAACTCATCTACTATCTGTCATGGAAGAGAGAGAATATTGGGAGTACAGTGTCGGCGAGAGAACTATCCTTCTCAAGTTTTTATGTGATGAGTTGCTCAACACTTCCCTCATACGCCAACACCTTGAGCAATGTGCTGAGTCATCTGCTGAATCACATCAAAAATTGCGTGCGCTTTCTGCAGAGTGGAAAAGCCTGAAAATTAAAGAAGAAATATTATCCAGTAAAGCTGCAAAAATTGACACATGCTCACTAGCAACTGCTGGAGAAGTTCTCAAAGAGGGGCTTTTGGGATCACTCTCAAATCCTGGTAAATGCCTGGTCCAGCCACATAGTGCAAGTGACAGTCCTAACAATTTTGGGGTATTTGTTGATAGTTTGCATTCAGAAGAGATAAATAAAGAGAAAAATGGTTTTCACAGTGTTGATAAAAGTGTATCGACAACGAATTCAGAGACTGATAGTCAGAAGAGAAATCCTGTAAATGTGGAGGGAGAGTTGAAGAATGCCTGTGCAGCTGTGGATGGTAGTCAGTTGCCTACAAATATGGCTTCCTTTGTGGATTCTCAATGTACTGACAAGTCTAGTAATCCTTTTTCAATGGTAAATAATATGCCTCAAGAAATTAACAGCTCTGGTGGAGCAGTTCATATCCAGGGTAACCAGCAGAAATGTGAAGGAAGAGATACATCTCTTGATCAGCAAGGATTAGGTGTCTCTTTTGATGGTCCCAAGTCTGCTGTGAATGAATCAGAAGCGTATCTCCTTGAGCTCAATGGTATCAGACATGATATCACACTTCTGCAGGAGTCAATAACTAGTGTTGGATCACAGCTTGTAAAGCTCTCTGTTCGTCGGGAATTTTTGGGAATTGATTCACTAGGTCGCTTTTACTGGGCTTCAGCAATGCCTGGCGGATGCCCGTGTATACTTGCTGATTCAACTGCTCTCATGTTGCGTGGGGGAAGAATGACAAATAGCAGAGACCCTGTGGATAAGATTTCTGCTTTGAAGAATTGTGCACTATCTGGCAAGGATACCTCTCAGATGTTAGGGCTGATGAAAGATTTCTCTCCTTTAATGTCTCTGCCAAGTAATACTGTAGGCTGTAATTCACCATGGGTTGCTTATCAAACTGATGCTGAAATTGAAGAGCTCTTGTGTTGGCTGAAGGATATTGACCCTAGAGAAAGAGAACTTAAAGATTCAATCATGATTTGGCAAAAGTCAAGATTCCAGGAGCTTATTCATATGCAGAACGAAGATCAGGTTGAGCCCCAAGGACCTTTTCCTTTGCCAGGGGATAAAGAGAAAATAGTGTCTGATTCTCTTGTTACAAAGGCAACCTCCTTGTTAGAGAAGAAATATGGCCCATTCTTAGAGTTGGGAACCCTTGAGGTGTTGAAGAAGCGGGGTAAAAAGGTGAGAACATCTAATGATGAAAAGTTGTATAGGTGCGAATGCTTAGAACCCATATGGCCTTCTAGGCAACACTGCATGTCTTGTCACAAAACCCTTTTGAATGATGTTGAACTGGAGGGACACAATGATGGCAAATGTAGTGCTGCTTTGTCTGCCTCACAGAAGAATAAAGATATCAGCGGATCTTCTAAAGGGAGAGGTAATTTGAAATTTGAGACCACCCATGAAAAGGCCAGAGGTAATGCAGAAACAGGTGGAACCTTGACGAGTGGAGGTTCTGAGCTTAGCTCAAGATTGATCAAGTTTTCAAATCAAGAATCCTCATACCCGTATGACTTTGAAGATGTATGTTCCAAGTTTGTGACTGAAGACTCCAACAGGGAAATTGTTAAAGAAATAGGTCTTATTGATTTAGATGGAATCCCATCCTTTGTTCCTTCTATATCTCCTTATGTTAGTGATTCTACAGTCATGCTAATATCAAACAAAAAGGATGAATATATTGCTGGTGGGTCCACGGCTCCTGAAGGGCAGATTCCTAGAGGAAGTGAAGGAAGTGGCTTGTGCCATGGCCATATATCAGGAATTCCTATTCGAAGTTCCAATGTGCATGAAAACATTAAAGCAGGAAAATCTAGTAGATCAACTTTGGGATCTTCAGGACAAAAGGATGGAAAATCTTCATTTTCTGTTCCTGCTTCACAAGTGGGCACTGACAGCTGCTGTGTGGTACCTCAATCTTCATTGAGACCATTGGTTGGAAAAGTTTCACATATTTTGAGGCTACTGAAGATTGGCCTACTTGACATGGATGCTGCACTCCCTGAAGTTGCTTTGAGGCCTTCTAAAGCAAAGTTGGAAAGAAGACAGGCTTGGCGTTCATTTGTTAAATCTGCAAGGACTATATATGAGATGGTTCAGGCGACATTTACACTGGAGGACTTGATTAAGACAGAGTACTTAAGAAATGACTGGTGGTACTGGTCATCACTCTCAGCCGCTGCCAAATCTTCTACTTTGTCATCCCTCGCCCTTCGAATATACACCCTTGATTCAGCCATTATGTATGAGAAAATGTCAAGTTCAAGTTTTACTGATTGCTCGGAACCTTCTGTGGTAGCAGAACAGAAAGCACCAGCCACTTCGGATGCAGAGAAATCCAAAGCAATACGGAAGTCAAGCAGGAAAAGGAAGGAACCTGATGGTTAA 6687 0.4284 MMELTDSGNELRDHKLTQDSRSGLGIDLNEIPSPSFAETLPDSIDIVRAYHENPAPPPGGPAGIPGDVRGSTCGACGKPEARGHVVVCDGCERGYHLGCAGMRGRQAINLDEWVCGECVSSGVKSKRWPLGVKSKHLLDINASPPSDADGEGSEELQDLRMHNEGHNSFSANSFGTALTYSNFYNGNAIGFQKASGVVTHAVRVGFEDVLNHTQSVTRNYEEVDMGLPPGSHRNVKNTAAGNPGELILQALRDFISERHGVLEEGWKVEFRQPMSSSELYAVYCAPDGKIFDSVFEVACYLGLMPGYNSLESETRNDRPVSSSGGSHLTRKRKSARLPVANGFAERRENFTNSCFKDPPSDAASAECANACGNISEATVSGRKEDDHSCPQQSADGLPLQFEDFFVLSLGKVDDRPSYCDANIIWPVGYKSCWHDKITGSIFTCEILDGGDSGPIFRIRRCSCSDFSIPVGSTILSMSNLCQFVSRTNEDEGKMNDNMECDGDESIQMILVDPCNPTENDVLSCLESFSGEAHDSHTLDVLQPAAGPVQDETHNLSDNLGSVGEIVVEECSSSSAWKDISQKLVNACSEICRQKGTLKLYCKHVENEMYVHKWDIRNDKNEPTSFGKFCGSPVLGIPAMVHADNDLESLYEVLRKWLEQDRFGLDVEFVQEVLELLPGVEGFSRYEFLDARSNSSSLPTVGNGFLVADWRDRSQYQDETVQGLYRRHKKIKLFRECVXEDHCPPPGKPLSSRVPFELVGDVLQVWELLHRFHEILGLKEPLSLDELEKELINPWFNRSVFNEKLESDGCGGPMLSPNCEAAPSVSAGSPHAFIQVETEAMKEAAQVKLALFTYTTCFGASLTKAHNSLLEVLIGELQSKVAALVDPNFDPGELRTKRGRRKDADSTVPARRAKLNMLPINELTWPELARRYILAVLSMDGNLDSPEITARESGKVFRCLQGDGGLLCGSLTGVAGMEADALLLAEATKKIFGSVTGESDVLTFEDEELDAKDACEKTSVNDGSIPEWAQLLEPVRKLPTNVGTRIRKCVNDALLKDPPEWARKILLHSISKEVYKGNASGPTKKAVLSVLADVCGEGSQQKPNKGRRKKTVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFLEDVHELWNNVRIAFGDQPDLVELADKLSENFELLYNSEVLTYVQRFGEYAKLGNLSAEMRKEVESFLASTSEIPKAPWDDGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDSKHVVQDVSQCSKLVGKPRSKKFKGEVTSLYLEALTHLLSVMEEREYWEYSVGERTILLKFLCDELLNTSLIRQHLEQCAESSAESHQKLRALSAEWKSLKIKEEILSSKAAKIDTCSLATAGEVLKEGLLGSLSNPGKCLVQPHSASDSPNNFGVFVDSLHSEEINKEKNGFHSVDKSVSTTNSETDSQKRNPVNVEGELKNACAAVDGSQLPTNMASFVDSQCTDKSSNPFSMVNNMPQEINSSGGAVHIQGNQQKCEGRDTSLDQQGLGVSFDGPKSAVNESEAYLLELNGIRHDITLLQESITSVGSQLVKLSVRREFLGIDSLGRFYWASAMPGGCPCILADSTALMLRGGRMTNSRDPVDKISALKNCALSGKDTSQMLGLMKDFSPLMSLPSNTVGCNSPWVAYQTDAEIEELLCWLKDIDPRERELKDSIMIWQKSRFQELIHMQNEDQVEPQGPFPLPGDKEKIVSDSLVTKATSLLEKKYGPFLELGTLEVLKKRGKKVRTSNDEKLYRCECLEPIWPSRQHCMSCHKTLLNDVELEGHNDGKCSAALSASQKNKDISGSSKGRGNLKFETTHEKARGNAETGGTLTSGGSELSSRLIKFSNQESSYPYDFEDVCSKFVTEDSNREIVKEIGLIDLDGIPSFVPSISPYVSDSTVMLISNKKDEYIAGGSTAPEGQIPRGSEGSGLCHGHISGIPIRSSNVHENIKAGKSSRSTLGSSGQKDGKSSFSVPASQVGTDSCCVVPQSSLRPLVGKVSHILRLLKIGLLDMDAALPEVALRPSKAKLERRQAWRSFVKSARTIYEMVQATFTLEDLIKTEYLRNDWWYWSSLSAAAKSSTLSSLALRIYTLDSAIMYEKMSSSSFTDCSEPSVVAEQKAPATSDAEKSKAIRKSSRKRKEPDG 2229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1988 2229 PANTHER OS02G0192300 PROTEIN 14 2225 - -
Prci3g1988 2229 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1352 1396 IPR028942 -
Prci3g1988 2229 Gene3D - 1114 1230 IPR036427 GO:0005515
Prci3g1988 2229 MobiDBLite consensus disorder prediction 1 20 - -
Prci3g1988 2229 Gene3D - 397 506 - -
Prci3g1988 2229 ProSiteProfiles Zinc finger PHD-type profile. 1270 1320 IPR019787 -
Prci3g1988 2229 ProSitePatterns Zinc finger PHD-type signature. 73 118 IPR019786 -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 1495 1511 - -
Prci3g1988 2229 Pfam Methyl-CpG binding domain 253 305 IPR001739 GO:0003677
Prci3g1988 2229 ProSiteProfiles FYR domain FYRN motif profile. 396 449 IPR003888 GO:0005634
Prci3g1988 2229 CDD PHD1_Lid2p_like 1272 1317 - -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 311 328 - -
Prci3g1988 2229 CDD PHD_SF 72 118 - -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 1 28 - -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 2208 2229 - -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 2031 2059 - -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 1884 1918 - -
Prci3g1988 2229 Pfam Bromodomain 1161 1215 IPR001487 GO:0005515
Prci3g1988 2229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 138 IPR013083 -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 2202 2229 - -
Prci3g1988 2229 SUPERFAMILY FYVE/PHD zinc finger 71 130 IPR011011 -
Prci3g1988 2229 SUPERFAMILY DNA-binding domain 254 307 IPR016177 GO:0003677
Prci3g1988 2229 ProSiteProfiles Zinc finger PHD-type profile. 70 121 IPR019787 -
Prci3g1988 2229 Pfam PHD-finger 73 120 IPR019787 -
Prci3g1988 2229 Pfam PHD-finger 1272 1318 IPR019787 -
Prci3g1988 2229 SUPERFAMILY Bromodomain 1107 1226 IPR036427 GO:0005515
Prci3g1988 2229 ProSiteProfiles Bromodomain profile. 1163 1211 IPR001487 GO:0005515
Prci3g1988 2229 SMART PHD_3 72 119 IPR001965 -
Prci3g1988 2229 SMART PHD_3 1272 1318 IPR001965 -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 1487 1511 - -
Prci3g1988 2229 ProSitePatterns Zinc finger PHD-type signature. 1273 1317 IPR019786 -
Prci3g1988 2229 Pfam DDT domain 756 788 IPR018501 -
Prci3g1988 2229 MobiDBLite consensus disorder prediction 311 331 - -
Prci3g1988 2229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1231 1331 IPR013083 -
Prci3g1988 2229 SUPERFAMILY FYVE/PHD zinc finger 1258 1324 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1988 Prci-Chr3 34295490 34308764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1988 2 2229 C2H2 Transcription Factor Family AT3G01460 45.518 0.0 1781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Prci3g1988 Bromodomain 5.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1988 K22768 - gmx:100820223 2869.72