Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1958 ATGTTGACTCAAATTTTGAAACATAACATGTTATCGGTTGTAATTGGTAAGCAACAAAGATCTCATTGGAGGGAAATGGCGAGAGACACAAGCTTGGATGGGGAAATTATGACATCTGATGATGCGACAGGATCAGCAAATCATCCACCAACTGAAGGACTTGAAGTTGTCCAAACAAACACAGACTGGCAGCAACAACATTTTAAGAGCAAGGCCAAAGAAAAAAGCTATAGAACAGTTCCTTTCTACAAGCTTTTCTCATATGCAGATAGTTTGGATCGTCTTCTCATGTTTGTTGGGACAACAGCGGCCATTGCCAATGGAATGACTATACCTTTGCTGATGATAATTTTTGGAAATGTCATTGATGCATTTGGAGGAACCAGTGACACCAAAGAAATCGTTCATAATGTTTCCAAGGCGTCTATTGACTTCGTATACTTGGCTATGGGTACCTTTGTAGTTTCATTTTTGCAGGTGACTTGCTGGATGGTCACTGGAGAGAGACAGTCTGCGAGGATAAGAAGCTTATACCTTGAAGCAATTTTGAGACAAGAAGTAAGCTTCTTTGATAGGGAAACCAATGGTGGAGAGGTTATTACAAGGATGTCAGGTGACACTGTTCTCATTCAAGATGCCATGGGAGAGAAAGTAGGAAAGTTCATACAACATGTGGCAACATTCTTGGGAGGTGTTGTGATATCATTCTCTAAGGGTTGGCTTCTAACCCTCGTCTTGTTATCTTTTCTTCCACTTCTTGTCCTCTCTGGTGCCTTGATGAGTTTCGTCGCTGCAAAGATGGCATCTCGTGGACAAGCAGCCTATTCTACGGCAGCAAATGTGGTGGACCAGACAATCAGTTCCATTCGAACTGTTGCATCATTCACGGGGGAGAAGCAAGCCATAACCCAATACAATAAATCTTTGACAAGAGCTTACCGTGCTGGTGTGGTAGAGGGAGCAGCTTCTGGTTGCGGCTTAGGTTCGGCTCGTTTGTTTTTGTTCTCCAGTTATGCTTTGGCCGCATGGTATGGAGGGAAGATGGTACTAGAGAAAGGATATACAGGAGGACAAGTCATGAGTATCTTTTTTGCAATATCTACTTGCACCCTGTCACTTGGGCAGTCATCTCCCAGTTTGATTGCATTTGCTGCGGGACAAGCCGCAGCTGTTAAAATGTTTGAAACAATCAAGAGGAAACCAGAAATTGATGCTTATGACACTTCTGGTCAAAAGTTAGAAGACCTTCACGGAGATATAGAACTAAAGGGGGTTTGCTTTAGTTATCCTACAAGACCAAATGAACTAATATTCAATGGATTTTCTCTGTCAATACCAAGTGGCACTACCACTGCTCTGGTTGGGCAAAGTGGGAGTGGGAAGTCAACCGTTATCAATTTGATAGAGAGGTTTTATGATCCACAAGCCGGTGAAGTTCTCATTGACAATATCAACATCAAAGAGTTCAATCTAAAATGGATTAGACAGAAAATAGGCCTTGTCAGCCAGGAACCGATTCTCTTTACCTGTAGCATTAAAGAGAATATTGCTTATGGCAGAGATGGTGCAACCGATGAAGAAATCAAAGCTGCAGCAGTTCTTGCTAATGCTGCTAAATTTGTTGATAAATTTCCTCAGGGACTAGACACAATGGTAGGCGAGCATGGAACTCAGCTCTCGGGGGGTCAAAAGCAGAGAATTGCAATCGCCAGAGCAATCTTGAAAGACCCAAAAATTTTAATTCTTGATGAAGCTACCAGTGCCTTGGATGCAGAATCTGAGCGAGTAGTACAGGAGGCATTGGACAGAATTATGATAAGCAGGACTACGGTGATTGTAGCCCATCGGTTAAGTACTATAAGGAACGCAGATATAATCGCCGTTATCCATCAAGGAAAGATAGTAGAAAAAGGCTCACATGCAGAGCTCATAAGGGATCCAGATGGAGCCTATAGCCAGCTCATTCGATTGCAAGAAACTAAAAGAGAACAAGAACAAATTAGTGCAAATTACAAGGATAAGCCTGAAAGCTTTCAGGACTCTGAACGACAATCAAGTCAACGATTTTCTTTCCTCCGATCAACAAGCCAAGGATCATCTGGAAAAGGAAACAGCGGCCGTCACTCTTTCTCAAGTCTCACTTCTGCAGCAGCAGGAGATTCTGATGCATCACATAACCCCGCCAAAGTCTCTCTTCTCCGCCTTGCTCATCTTAACAAGCCTGAATACCCAGTGTTACTTTTGGGTGCTTTGGCCGCAACACTAAATGGAGCAGTATTACCAATTTTGGGGCTCCTGCTTTCTGGCATGATACATACTTTCTTTGAGCCTGCAGATAAACTACGTAAAGATTCAAAATTCTGGGCATATGTGTATGTTGCACTTGCTGTGGCAGCGTTCTTAGTGAATTCCATACGGTCCTACTTCTTTGGCGTAGCTGGTTGTAAATTGATAAAAAGGATTCGTCAACTGTGTTTCGAGAAAATAATTCACATGGAAATAGGTTGGTTTGACAAAGCTGAGAATTCAAGCGGAGCACTTGGAGCAAGACTCGCTACTGATTCTGCTGCTATTCGAGCTGTGGTTGGGGATGCACTGGGTTTGCTGATTCAAGATATTTCTACTGCAATCTCTGCCTTAGTGATTGGCTTTGAGGCAAGCTGGCATCTTTCATTGATCATTCTTGCTATGCTACCTTTATTGGTAGTAGTAAATTCTCAGGTGCATACTAAATCCATCCGAGGATTCAGCTCAGATGCAAAGAAACAATATGAGGAAGCAAGTCAAGTTGCAAATGATGCAGTAGGGAGTATCAGAACAGTGGCAGCTTTCTGTGCTGAAGAGAAGGTGATGGACTTATACCATAAGAAATGTGAAGGACCAATAAAGGCAGGTATAAGGCAAGCATTGATCAGCGGAACTGGTTTAGGCGTATCGTTCCTTGTCTTGTATTCTGTCTATGGATGTAGTTTTTATGCTGGTGCTCGACTTGTTCAAGATGGCAAAATATCAATCTCACATGTTTTTCGTGTCTTCTTTGTTCTCACTATGGCAGCTGTAGCACTCTCTCAATCCGGTTTAATGGCCCCAAGCGCAAGCAGAGCAACAACTTCTGTTGCTTCTATATTTGATATTCTTGATCAGAAGTCAAAAATAGACCCCAGTGATGTCTCAGGATTGACATTGCAAGATTTGAAGGGCGAAGTTGAGTTTCGTCATGTTGCTTTCAAGTATCCCATCAGGCCTGATGTTCAAATATTTAGAGATCTTTGCTTGACCATTCACCCAGGAAAGACCGTTGCACTAGTAGGAGAAAGTGGAAGTGGAAAGTCTACTGTGATCTCATTGCTACAAAGATTTTATGACCCAAACTCAGGTCACATTACATTGGACGGAATTGAAATCCAAAAGCTACAAATCAAGTGGTTAAGGCAACAAATGGGTTTAGTAAGCCAGGAGCCCATGTTGTTCAATGACACCATTCGAGCTAATATTGCATTTGGAAAGGAAGGATATGCAACAGAAGTCGAAATTATAGCTGCTGCAGAACTGGCAAATGCGCATAAGTTCATTAGCAGCTTGTATCAGGGGTATGACACAATTGTGGGCGAGCGTGGAGTTCAATTATCTGGAGGGCAAAAGCAACGAGTGGCAATTGCAAGAGCCATAGTGAAGAATCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCTCTTGATGCTGAATCTGAAAAAGTTGTTCAAGATGCACTGGATCGTGTTATAGTGGATAGAACCACAATTGTTGTGGCCCATAGGTTATCCACAGTTAAGAATGCAGATTTGATTGCTGTGGTTCAAAATGGAGTCATTGCAGAAAAGGGAAACCACAAGACTTTGCTCAGAAAGGGAGAAGCCTATGCTTCCTTAGTAGCACTGCACAAAAGTGCTTAA 3933 0.4246 MLTQILKHNMLSVVIGKQQRSHWREMARDTSLDGEIMTSDDATGSANHPPTEGLEVVQTNTDWQQQHFKSKAKEKSYRTVPFYKLFSYADSLDRLLMFVGTTAAIANGMTIPLLMIIFGNVIDAFGGTSDTKEIVHNVSKASIDFVYLAMGTFVVSFLQVTCWMVTGERQSARIRSLYLEAILRQEVSFFDRETNGGEVITRMSGDTVLIQDAMGEKVGKFIQHVATFLGGVVISFSKGWLLTLVLLSFLPLLVLSGALMSFVAAKMASRGQAAYSTAANVVDQTISSIRTVASFTGEKQAITQYNKSLTRAYRAGVVEGAASGCGLGSARLFLFSSYALAAWYGGKMVLEKGYTGGQVMSIFFAISTCTLSLGQSSPSLIAFAAGQAAAVKMFETIKRKPEIDAYDTSGQKLEDLHGDIELKGVCFSYPTRPNELIFNGFSLSIPSGTTTALVGQSGSGKSTVINLIERFYDPQAGEVLIDNINIKEFNLKWIRQKIGLVSQEPILFTCSIKENIAYGRDGATDEEIKAAAVLANAAKFVDKFPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPKILILDEATSALDAESERVVQEALDRIMISRTTVIVAHRLSTIRNADIIAVIHQGKIVEKGSHAELIRDPDGAYSQLIRLQETKREQEQISANYKDKPESFQDSERQSSQRFSFLRSTSQGSSGKGNSGRHSFSSLTSAAAGDSDASHNPAKVSLLRLAHLNKPEYPVLLLGALAATLNGAVLPILGLLLSGMIHTFFEPADKLRKDSKFWAYVYVALAVAAFLVNSIRSYFFGVAGCKLIKRIRQLCFEKIIHMEIGWFDKAENSSGALGARLATDSAAIRAVVGDALGLLIQDISTAISALVIGFEASWHLSLIILAMLPLLVVVNSQVHTKSIRGFSSDAKKQYEEASQVANDAVGSIRTVAAFCAEEKVMDLYHKKCEGPIKAGIRQALISGTGLGVSFLVLYSVYGCSFYAGARLVQDGKISISHVFRVFFVLTMAAVALSQSGLMAPSASRATTSVASIFDILDQKSKIDPSDVSGLTLQDLKGEVEFRHVAFKYPIRPDVQIFRDLCLTIHPGKTVALVGESGSGKSTVISLLQRFYDPNSGHITLDGIEIQKLQIKWLRQQMGLVSQEPMLFNDTIRANIAFGKEGYATEVEIIAAAELANAHKFISSLYQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVIVDRTTIVVAHRLSTVKNADLIAVVQNGVIAEKGNHKTLLRKGEAYASLVALHKSA 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1958 1310 Pfam ABC transporter 1089 1237 IPR003439 GO:0005524
Prci3g1958 1310 MobiDBLite consensus disorder prediction 682 721 - -
Prci3g1958 1310 MobiDBLite consensus disorder prediction 665 681 - -
Prci3g1958 1310 Gene3D - 410 659 IPR027417 -
Prci3g1958 1310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 420 656 IPR003439 GO:0005524
Prci3g1958 1310 SUPERFAMILY ABC transporter transmembrane region 84 404 IPR036640 GO:0005524|GO:0016020
Prci3g1958 1310 Gene3D - 1059 1310 IPR027417 -
Prci3g1958 1310 Coils Coil 654 674 - -
Prci3g1958 1310 Pfam ABC transporter transmembrane region 97 368 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1958 1310 Pfam ABC transporter transmembrane region 746 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1958 1310 MobiDBLite consensus disorder prediction 665 724 - -
Prci3g1958 1310 CDD ABC_MTABC3_MDL1_MDL2 420 658 - -
Prci3g1958 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1060 1305 IPR027417 -
Prci3g1958 1310 Gene3D ABC transporter type 1, transmembrane domain 84 676 IPR036640 GO:0005524|GO:0016020
Prci3g1958 1310 FunFam ABC transporter B family member 9 84 417 - -
Prci3g1958 1310 CDD ABC_6TM_Pgp_ABCB1_D2_like 738 1052 - -
Prci3g1958 1310 CDD ABC_6TM_Pgp_ABCB1_D1_like 97 381 - -
Prci3g1958 1310 Pfam ABC transporter 439 587 IPR003439 GO:0005524
Prci3g1958 1310 CDD ABC_MTABC3_MDL1_MDL2 1069 1304 - -
Prci3g1958 1310 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 747 1034 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1958 1310 PANTHER ABC TRANSPORTER B FAMILY 60 661 IPR039421 -
Prci3g1958 1310 Gene3D ABC transporter type 1, transmembrane domain 705 1057 IPR036640 GO:0005524|GO:0016020
Prci3g1958 1310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1069 1306 IPR003439 GO:0005524
Prci3g1958 1310 FunFam ABC transporter B family member 1 1059 1308 - -
Prci3g1958 1310 SMART AAA_5 447 619 IPR003593 GO:0016887
Prci3g1958 1310 SMART AAA_5 1096 1289 IPR003593 GO:0016887
Prci3g1958 1310 FunFam ABC transporter B family member 1 410 659 - -
Prci3g1958 1310 ProSitePatterns ABC transporters family signature. 559 573 IPR017871 GO:0005524|GO:0016887
Prci3g1958 1310 ProSitePatterns ABC transporters family signature. 1209 1223 IPR017871 GO:0005524|GO:0016887
Prci3g1958 1310 SUPERFAMILY ABC transporter transmembrane region 734 1053 IPR036640 GO:0005524|GO:0016020
Prci3g1958 1310 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 98 385 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1958 1310 FunFam ABC transporter B family member 1 726 1035 - -
Prci3g1958 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 658 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1958 Prci-Chr3 33990330 33997576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1958 130 664 Calmodulin-binding Proteins AT2G36910 39.963 5.45e-115 389