Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1947 ATGAAGAGAACTAGGGACGATGCTTATGCTTCTTCTCAATTAAAGCGACCCTTGGGTTCTTCACGGGGGGATTCCTATGGCCAATCCCAAATCCCTGGAGGAGGGGTAGGGGGAGTGGGAGGGGGAGGTGGTGCTACTTCACAGAAATTGACTACCAATGACGCACTATCATATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACATGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAACTATTTAAAGGGCACAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAGGGGTATGAGATAACACTTGACGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATAAGCTTCGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCGTTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTTGCTACCCTTTTCGAGGACCATCCAGATTTACTTGAGGAGTTTACTAGATTCTTGCCAGATACATCTGCAACACCTTCAACACAGCATGTTCCTTATGGTCGAAATTCATTTCCACGTTTTAGTGAGCGAGGTTCTACAGCACCCATGATACGGCCAATGCAAGTGGACAAGCACCGCTATCGACGGGAAAGGCTTAATTCTCATGATCGTGATCCAAGTGTTGATCATCCTGAACTGGATGATGACAAGGCAATAATGAAATCTAACAAGGAGCAAAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGACCAGGATGAGAGAGAACCTGATCATGATAATAACAGGGATTTAAAATCACGATTTCCTGACAAAAAGATATGTGTCAAGAAGGCTGAAGATTTTGGGTTGGCAGCTGATTTTGCTTCTTATGATGACAAAGATACCTTAAAGAGTATGTATAACCAAGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTCGGAAAGTACCCTGATCTGATGGATGAATTCAATGAGTTCTTGGAGCGTTGTGAAAATATTGATGGTTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTATGTGGTGATGGTCAATTATCCAGAACATTAAAATTGGAGGACAAAGACAAAGATCAGAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTTGACTTAAGTAACTGTCAACTTTGTACCCCAAGCTATCGTCTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGCGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGTAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTAAGCTCAGCTTCCAAATGTGCAGAGGAGTTGTATAGTAGCGTTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAACTTAAGGTGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTTCTGGACATATTACGAAAAAATCCAAGTCATGCACTTCCTGTGATATTGATTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAACAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCATCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACTAAATCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAGCATAAAGAGTATGATATTCTTCAGGCTATCGCTGCTGGAAATAGACAGCCTCTAATTCCACATCTAGAGTTTGAATATTTGGATGCTGGGATTCATGAGGACCTATATAAACTTATTCGTTATTCATGTGAAGAGGTTTTCTCTAGTAAAGATATGTCGAACAAAATTATGAGACTTTGGACTACCTTTTTGGAGCTGATACTTGGTGTTCCCTCTCGCACTCATGGGACAGAAAATGTGGAGGACAGGAAAACAGGGCAACGTGTTGCCCATTTTATTGCTTCAAGTACAGGAGGTGATGGAAACTCCAACGGAGACTCTATTCTAATGAATTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAACTGAGGTAAAGAATGGTCAACAGACTAATTTAGCAGCCAATGACAAAGAAAATGGACCTGGTGACAGTGACCGTACTTGTAGAGATGATCCTCTAATGGAGAAAGGGAAGAACAATGCGGATTGTAGTGAAAAAATCTCTGGGTTTAGTAAGCAGATTGCTTCTGATGAGCAATCAACTATTAATAATACTTCAATTGCAGTTAGAGGAGAAACTAGCGTGAGCAAGACCTGCTTAGAAATTGCTTCAGGTTGTTTGCTTAATCCAGCAAGACCAGCTGCTACACTAGGTGGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAATGGACCTTTGATGGAGGGACGGGACATTGCCCCTCCACTTCCATTGGCCAATGGAGTGCTTATCGAAAGCACTAAAGTCAAAAGCCATGAAGAATCTGCTGGACCTTACAAAGCTGAAAAGGAGGAGGGTGAATTATCACCCAATGCTGACTCAGAGGAGGATAATTTTGTTGGGTATGGAGACTCCAGTGGGCAAACACTGCCTAAGTCAAAGCATAATATTGAAAGAGGAAATTATAAATTGAGAAATGGGGAGGAAGATTGCTGTCCTGAGGCTGGAGGTGATAATGGTGCGGATGCTGATGATGAGGACAGTGATAATGTTTCTGAAGCTGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGATGAAGATATAGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGGAGAAGCTGAGGGGATATGTGATGCACAATCTGCTGGAGGAGAGGGCTCGTCATTACCATTATCTGAAAGGTTCCTTCTGTCTGTAAAGCCTCTCACGAAGCGTGTTGCCGCAATTTCACTTGTTGAGGAAAGAAATAATTCCAGGATCTTCTATGGAAACGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATATCATTAGCGAAAAAATATTCAATGAATGCTGAAGCAAAGTGGAAAACAACCAAGGAGGCTTCTTCCCCAGATCCCTATTCGAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGTGAAGTTTGAAGATGAATGCCGAGCAATAATTGGAAACCAGTCATATATATTATTCACATTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAACAGTTATAACGGATGAGATAGACAATAAGCTTCTCCAATTGTATGAGTATGAAAAGTTGCGGAAACCTGGCAAATTAATCGATTCAGTATATTATGCAAATGCTCGCGTCATCCTTCATGATGAGAATATATATCGTTTTGAATGTTCATGTGCCCCCTCTTGGGTGTTCATTCAGCTGATGGACACTATGAACGAAAAGCCCGAAGTGTTTGCCGTTTCAGTTGATCCAAATTTTTCCTTTTACCTGTATAATGATTTTCTGTCTGTCTCTCCCGGAAAAAAAGAACCCCATGGCATTATCCTGCGAAGAAACAAGCGCAGATATGGAGATCTTGATGAACTTGCATCTATGTGCTTGGCCATGGAAGGTGTTAAAATAATAAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATCTCTTATGTTCTGGACACGGAAGATTTTTTCTTCCGCCCCAAAAGGCACAGGAGAACATCATCACTGACCACATCTTCCCGGCATCATCGAGCTAGACAGGAAAGATTTTTCAGATTTTTATCAGTTTCATAA 4164 0.409 MKRTRDDAYASSQLKRPLGSSRGDSYGQSQIPGGGVGGVGGGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHPDLLEEFTRFLPDTSATPSTQHVPYGRNSFPRFSERGSTAPMIRPMQVDKHRYRRERLNSHDRDPSVDHPELDDDKAIMKSNKEQRKRVDKESRDRKIRDQDEREPDHDNNRDLKSRFPDKKICVKKAEDFGLAADFASYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLCGDGQLSRTLKLEDKDKDQKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSASKCAEELYSSVNENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKNPSHALPVILIRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQHKEYDILQAIAAGNRQPLIPHLEFEYLDAGIHEDLYKLIRYSCEEVFSSKDMSNKIMRLWTTFLELILGVPSRTHGTENVEDRKTGQRVAHFIASSTGGDGNSNGDSILMNSRLPKSDNEVDGRVTEVKNGQQTNLAANDKENGPGDSDRTCRDDPLMEKGKNNADCSEKISGFSKQIASDEQSTINNTSIAVRGETSVSKTCLEIASGCLLNPARPAATLGGDDGVAISQGGNGPLMEGRDIAPPLPLANGVLIESTKVKSHEESAGPYKAEKEEGELSPNADSEEDNFVGYGDSSGQTLPKSKHNIERGNYKLRNGEEDCCPEAGGDNGADADDEDSDNVSEAGEDASGSESAGDACSREEHEEDEDIERDDVEGKAESEGEAEGICDAQSAGGEGSSLPLSERFLLSVKPLTKRVAAISLVEERNNSRIFYGNDDFFVLFRLHQILYERISLAKKYSMNAEAKWKTTKEASSPDPYSRFMNALYNLLDGSADNVKFEDECRAIIGNQSYILFTLDKLIYKLVRQLQTVITDEIDNKLLQLYEYEKLRKPGKLIDSVYYANARVILHDENIYRFECSCAPSWVFIQLMDTMNEKPEVFAVSVDPNFSFYLYNDFLSVSPGKKEPHGIILRRNKRRYGDLDELASMCLAMEGVKIINGLECKIACSSSKISYVLDTEDFFFRPKRHRRTSSLTTSSRHHRARQERFFRFLSVS 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1947 1387 Pfam C-terminal domain of Sin3a protein 1106 1354 IPR031693 -
Prci3g1947 1387 SMART hdac_interact2seq4b 467 567 IPR013194 -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 799 814 - -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 816 839 - -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 202 223 - -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 767 787 - -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 14 28 - -
Prci3g1947 1387 SUPERFAMILY PAH2 domain 337 403 IPR036600 GO:0006355
Prci3g1947 1387 MobiDBLite consensus disorder prediction 965 979 - -
Prci3g1947 1387 FunFam Paired amphipathic helix protein Sin3 54 116 - -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 767 839 - -
Prci3g1947 1387 Gene3D Paired amphipathic helix 54 116 IPR036600 GO:0006355
Prci3g1947 1387 MobiDBLite consensus disorder prediction 931 952 - -
Prci3g1947 1387 Pfam Paired amphipathic helix repeat 155 199 IPR003822 GO:0006355
Prci3g1947 1387 Pfam Paired amphipathic helix repeat 71 115 IPR003822 GO:0006355
Prci3g1947 1387 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Prci3g1947 1387 MobiDBLite consensus disorder prediction 235 303 - -
Prci3g1947 1387 ProSiteProfiles PAH domain profile. 132 202 IPR003822 GO:0006355
Prci3g1947 1387 ProSiteProfiles PAH domain profile. 48 118 IPR003822 GO:0006355
Prci3g1947 1387 MobiDBLite consensus disorder prediction 431 450 - -
Prci3g1947 1387 SUPERFAMILY PAH2 domain 44 117 IPR036600 GO:0006355
Prci3g1947 1387 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Prci3g1947 1387 Gene3D Paired amphipathic helix 332 405 IPR036600 GO:0006355
Prci3g1947 1387 MobiDBLite consensus disorder prediction 980 996 - -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 202 303 - -
Prci3g1947 1387 Pfam Sin3 family co-repressor 471 561 IPR013194 -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 1 45 - -
Prci3g1947 1387 PANTHER SIN3B-RELATED 48 1250 IPR039774 GO:0003714
Prci3g1947 1387 MobiDBLite consensus disorder prediction 931 1073 - -
Prci3g1947 1387 Gene3D Paired amphipathic helix 131 203 IPR036600 GO:0006355
Prci3g1947 1387 FunFam Paired amphipathic helix SIN3-like protein 131 202 - -
Prci3g1947 1387 SUPERFAMILY PAH2 domain 129 201 IPR036600 GO:0006355
Prci3g1947 1387 FunFam Paired amphipathic helix protein SIN3 331 405 - -
Prci3g1947 1387 MobiDBLite consensus disorder prediction 1003 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1947 Prci-Chr3 33925542 33937936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1947 43 151 WRKY Transcription Factor Family AT4G12020 50.909 2.03e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci3g1947 Sin3a_C 2.4e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1947 K11644 - gmx:100807181 2073.51