Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1943 ATGGTGGGTTGGGGTTCGGATGGCAAGGCTGAGGTCATGAAAACGAAGAAAAGTAGTGGGTCTATTCGATCCATTTTCATGCATGCCGATTTCCAAGATTGGTTTTTGATGGCTTTAGGTGTGTTGGGGTCTTTCGGTGACGGCTTCACTGGGCCTCTTGTGTTGTTTATCAGCAGCCGCTTGATGAACAATATAGGAGGGGCTTCATCTCGGATGGATGTAACTGAGTTTGTTCACAACTCTAATGAGAATGCAGTGTCTCTATTATATTTGGCGTGTGGGTCATTCTTATCATGCTTCCTCGAGGGTTATTGTTGGACGAGAACAGGACAGAGACAAGCAGCAAGAATGAGATCCAGGTACTTGAAGGCAATGCTAAGACAAGAAGTCGCATACTTTGATTTGCAAGTTACAAGCACGTCCGAGGTCATCACCAGCGTCTCCAACGATAGCACCGTAATTCAGGATTTTCTTAGCGAAAAGGTTCCAAACTTCCTGACGAATCTCTCTATGTTCGTTGCGAGCTACGTCGTGGCCTTCTCGATGTTCTGGAGATTGGCTATTGTAGCGTTACCTTTCGTGGTTCTTCTCGTAATCCCTGGTTTGATTTACGGAAGAACATTAACAGGATTGGCTAGCAAGATCAGGGACGAGTATAACCAGGCCTGTGCAATAGCAGAGCAAGCAATATCTTCCATCAGAACCGTCTATTCCTTTGCTGGGGAAACCAAAACCATAGCTGCTTTCTCCTCCGCTTTACAGGGCTCAGTCAAGCTTGGTCTAAAACAAGGCTTGGCTAAAGGCTTGGCCATAGGAAGCAACAGTATTGTGTTCGTCATATGGTCCTTCATTTGCTATTACGGTAGCCGACTCGTCATGTACCATGGCGCTCAAGGTGGCACCGTCTTCACCGTCGGAGCAGCCATGGCTCTCGGCGGACTATCGCTGGGAGCTGGTTTATCCAACGTGAAGTACCTGTCGGAAGCAAGCTCAGCAGGGGAACGCATAATGGAGGTGATAAAAAGAATTCCCAAGATTGATTCAGAGAACATGGGAGGTGAGATTCTGGGGAGAATTCGCGGGGAAGTAGAGTTCGATCACGTGGAGTTTGCTTACCCGTCGAGGCCAGACAGCATTATCCTGAAGGATTTCAGTGTTAAGATTCCGGCGGGGAAGACAGCGGCGTTGGTGGGCGGGAGCGGCTCAGGGAAGTCCACAGTGATATCACTGTTGCAGAGATTTTATGACCCAACCGGAGGAGAAATACGAGTGGACGGAGTGGGGATCAAGAGATTGCAACTAAAGTGGATGAGGTCGCAGATGGGGCTGGTGAGCCAAGAGCCGGCTCTGTTCGCAACAAGCATTAAAGAGAACATACTGTTTGGGAAAGAAGACGCTAGTGAGGAAGAAATTGTGGAGGCTGCCAAGGCTTCTAATGCTCATGATTTCATTTCTCAGTTGCCTTTGGGATACGATACCCAGGTAGGTGAGCAGGGCATTCAAATATCAGGGGGACAAAAACAGAGGATTGCTATTGCGCGAGCAATGATAAAAAAACCGCAAATCCTCCTGCTTGATGAAGCAACAAGTGCGCTAGATAGTGAATCTGAACGAGTTGTCCAAGAAGCTTTAGATAATGCCACTGTTGGACGTACCACTATCATCATCGCTCACCACCTATCTACTGTTCAAAATGTCGACATTATTGCTGTCCTTCAAAATGGAAGCCTCATGGAAATAGGATCCCATGATGAGCTTATCAATAACAACAATGGACTTTATGCCTCTCTATTTCATCTCTACCAAATAGAGAAATCTAGAACAACTCAGGAGGATGCAGTCATCCTTACCTCTTCCACTGTATTAGATAAGGACATAAACAACACCGATAGCAAAAGACTATCTCTCGTGGCTCAATCTAGCTCTACAAATTCAATGGGACAGAGTCAAGTTTCAAGTGCTGAAGAAGAAATTGATGTTTCTGTAGAAGAAATGAAACTCCATGTTCCCTCGTTTTGGAGGTTGCTTGCCCTAAATCTCCCAGAATGGAAACAAGCTACTTTAGGGTGTTTTAGTGCGTTTCTATTTGGCGCAATTTACCCATTATTCTCATTCACAATGGGGTCCATGGTTTCTACCTTTTTTCTAACAGACCATGACGAGATTAAGAAGAAGATGAAGGTTTTTGCACTCTATTATCTGGGTTTAATGATGTCATCACTATTGATTAGTATAAGCCAGCATTATAGCTTCGCTTATATGGGAGAGTACTTAACCAAAAGGATAAGAGAGAGAACATTTTCTAAGATACTTACATTTGAAGTAAGTTGGTTTGATCAGCCTGAGAATACTACTGGTGCAGTTTGCTCTAGACTTGCGAAAGATGCCAATGTGATGAGGTCTCTAATAGGAGACAGAATGTCTCTATTGATACAAACTTTCTCGACGGTGATAATTGCTTGCACAATTAGCCTAGTGATTTCATGGAGATTCACCATTGTCATTGTAGCTATTCAACCCCTTATCGTAGTCAGCTATTACACTAGGAGAGTCCTACTTAAGAGCATATCTAAAAAGGCTAGTAAAGCCCAGGATGAATGTAGTAAGCTAGCTGCAGAGGCTGTTTCCAACCTTCGTATCGTTACAGCCTTCTCTTCCCAAGATCGAATACTCAAAATGCTTGAAAAAGCCCAAGAAGGCCCAAGACAAGAGAGCCTCAAACAATCATGGTTTGCAGGCATTGGGCTTGCTTTCTCACAAAGCATCACGGCTTGTACTTGGGCCTTAGACTTTTGGTATGGTGGGAGGCTAATGTCTATTGGTCTTATCAAAGCTGAAGCATTATTTCAAACATTCATGGTTCTAATGGGCACAAGTCGTGTCATTGCAGATGCAGGAAGCATGACTCTTGACCTTGTTAAAGGTGCAGATTCTTTAGGCTCCCTTTTCACAGTTCTTGATCGATACACAAAAATTGAACCTAATTTCCAAAATGGGTATAAGCCTAATAAGCTTACAGGCCTAATAGAACTTTGTGATATTCATTTTTCATAACCAACTAGGCCCAATAACATGATCTTTCAAGGGTTCTCAATGCGAATGGAAGCGGGAAAATCAACAGCATTGGTAGGGCAAAGTGGGTCTGGGAAGTCAACCATCATAGGATTGATCGAGAGATTTTACGATCCATTAAAAGGGATAGTGAGCATAGATGGAATAAACATAAAGTCATACCACCTTAGGACATTGAGAGAACACATAGCACTAGTAAGCCAAGAGCCCACACTATTTGCAGGAAGCATAAAGGAAAATATTGTGTATGGAGCAAGGAATGAGGTTGATGAAGCAGAGATGGTAAAGGCAGCAAAAGTAGCAAATGCTCACGAGTTCATATCAAGCTTAAAGGATGGGTATGAGACATGGTGTGGGGATAGAGGAGTACAACTATCAGGGGGTCAAAAGCAAAGGGTAGCAATAGCGAGAGCGATAATGAAGAACCCTGAAGTATTGCTATTGGACGAGGCGACAAGTGCATTGGATAGCCAGTCAGAAAGGGCAGTGCAAGAAGCACTAGAACGTGTTATGGTAGGGAGGACGAGTATGGTGGTGGCACATAAGTTGAGCACTATTCAAAAGTGTGATGTAATAGCTGTGTTGGAGAAGGGGAAGGTGGTGGAGAAAGGGACACATTCATCCTTGTTGGCTAAGGGACCAGGCGGGGTTTATTTTGCATTGATCAATCTTTAA 3747 0.4414 MVGWGSDGKAEVMKTKKSSGSIRSIFMHADFQDWFLMALGVLGSFGDGFTGPLVLFISSRLMNNIGGASSRMDVTEFVHNSNENAVSLLYLACGSFLSCFLEGYCWTRTGQRQAARMRSRYLKAMLRQEVAYFDLQVTSTSEVITSVSNDSTVIQDFLSEKVPNFLTNLSMFVASYVVAFSMFWRLAIVALPFVVLLVIPGLIYGRTLTGLASKIRDEYNQACAIAEQAISSIRTVYSFAGETKTIAAFSSALQGSVKLGLKQGLAKGLAIGSNSIVFVIWSFICYYGSRLVMYHGAQGGTVFTVGAAMALGGLSLGAGLSNVKYLSEASSAGERIMEVIKRIPKIDSENMGGEILGRIRGEVEFDHVEFAYPSRPDSIILKDFSVKIPAGKTAALVGGSGSGKSTVISLLQRFYDPTGGEIRVDGVGIKRLQLKWMRSQMGLVSQEPALFATSIKENILFGKEDASEEEIVEAAKASNAHDFISQLPLGYDTQVGEQGIQISGGQKQRIAIARAMIKKPQILLLDEATSALDSESERVVQEALDNATVGRTTIIIAHHLSTVQNVDIIAVLQNGSLMEIGSHDELINNNNGLYASLFHLYQIEKSRTTQEDAVILTSSTVLDKDINNTDSKRLSLVAQSSSTNSMGQSQVSSAEEEIDVSVEEMKLHVPSFWRLLALNLPEWKQATLGCFSAFLFGAIYPLFSFTMGSMVSTFFLTDHDEIKKKMKVFALYYLGLMMSSLLISISQHYSFAYMGEYLTKRIRERTFSKILTFEVSWFDQPENTTGAVCSRLAKDANVMRSLIGDRMSLLIQTFSTVIIACTISLVISWRFTIVIVAIQPLIVVSYYTRRVLLKSISKKASKAQDECSKLAAEAVSNLRIVTAFSSQDRILKMLEKAQEGPRQESLKQSWFAGIGLAFSQSITACTWALDFWYGGRLMSIGLIKAEALFQTFMVLMGTSRVIADAGSMTLDLVKGADSLGSLFTVLDRYTKIEPNFQNGYKPNKLTGLIELCDIHFSXPTRPNNMIFQGFSMRMEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVSIDGINIKSYHLRTLREHIALVSQEPTLFAGSIKENIVYGARNEVDEAEMVKAAKVANAHEFISSLKDGYETWCGDRGVQLSGGQKQRVAIARAIMKNPEVLLLDEATSALDSQSERAVQEALERVMVGRTSMVVAHKLSTIQKCDVIAVLEKGKVVEKGTHSSLLAKGPGGVYFALINL 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1943 1248 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524|GO:0016887
Prci3g1943 1248 Gene3D - 999 1248 IPR027417 -
Prci3g1943 1248 Gene3D ABC transporter type 1, transmembrane domain 648 996 IPR036640 GO:0005524|GO:0016020
Prci3g1943 1248 Gene3D ABC transporter type 1, transmembrane domain 25 352 IPR036640 GO:0005524|GO:0016020
Prci3g1943 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Prci3g1943 1248 Pfam ABC transporter 1028 1177 IPR003439 GO:0005524
Prci3g1943 1248 SUPERFAMILY ABC transporter transmembrane region 31 344 IPR036640 GO:0005524|GO:0016020
Prci3g1943 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 336 - -
Prci3g1943 1248 SMART AAA_5 1036 1222 IPR003593 GO:0016887
Prci3g1943 1248 SMART AAA_5 390 576 IPR003593 GO:0016887
Prci3g1943 1248 FunFam Putative ABC transporter B family member 8 652 997 - -
Prci3g1943 1248 FunFam ABC transporter B family member 4 999 1248 - -
Prci3g1943 1248 FunFam ABC transporter B family member 1 24 355 - -
Prci3g1943 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 601 IPR027417 -
Prci3g1943 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1246 IPR003439 GO:0005524
Prci3g1943 1248 Coils Coil 853 873 - -
Prci3g1943 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 992 - -
Prci3g1943 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1943 1248 Gene3D - 353 602 IPR027417 -
Prci3g1943 1248 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Prci3g1943 1248 SUPERFAMILY ABC transporter transmembrane region 674 988 IPR036640 GO:0005524|GO:0016020
Prci3g1943 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1943 1248 CDD ABC_MTABC3_MDL1_MDL2 1009 1248 - -
Prci3g1943 1248 FunFam ABC transporter B family member 4 353 608 - -
Prci3g1943 1248 Pfam ABC transporter transmembrane region 38 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1943 1248 Pfam ABC transporter transmembrane region 688 956 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci3g1943 1248 PANTHER ABC TRANSPORTER B FAMILY 9 699 IPR039421 -
Prci3g1943 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1246 IPR027417 -
Prci3g1943 1248 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Prci3g1943 1248 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1943 Prci-Chr3 33913914 33921576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1943 21 1248 Calmodulin-binding Proteins AT2G36910 43.041 0.0 1008