Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1918 ATGGGAAAGATAATGACAGAAAGTGCAGCTAGAGTTACGTTATTGTTAATGGCCACATTGGCCATTACTGTTCCATGCCTCGTCGACGCTAACATTGGAGATTTTGACGATTATCTCCGAGAAAAAGCTAAGCAGGCCCGGAGAGTGGCTCTTGAAGCATACGAACCTAACCCTTTGAAGGTCACGTCAGAGCTCAATATGCATGTCCATCTGGCGATGAATGAGGCCAAAAACAGCAGTAGAGGGAGGGACTTGAGCGAGAAGAGACACAAAGGACCGTGCTTGACCACCAACCCAATCGATCGATGCTGGAGATGCGACAAAGACTGGGAGAAGAATCGCTTTAAGCTAGCCGAATGTGCCATGGGTTTCGGCCGCAAGACCACCGGCGGGTTGGGCGGTAAGATCTATGTCGTCACAGATTCTTCCGATGTCGATGTAGCTAACCCGAAACCGGGAACTCTGAGGTACGCGGCGATCCAGAAGGAGCCATTGTGGATCATATTTGCGCACAGCATGGTGATTAAGCTGAAACAGGAGTTGCTGGTGAATTCCGACAAGACAATCGATGGACGAGGAGCCAATATTCACATAAAAAGCGGTGGCGGCCTCACCCTGCAATTCGTGAAGAACGTCATCATCCACAATCTTCGCATTCGCAATATCAAAGCAAAGAAGGGAGGTCTGGTGAGGGATGCTCCGGACCATGTCGGGTTGAGAACCAGAAGCGATGGCGATGCCATCAGCATCTTCGGATCCACCAACGTCTGGATCGATCACATCTCGATGTCCAACGCCGACGACGGGCTAGTCGACGCCATCATGGGTTCCACCGCCATTACCATATCAAATTGCCACATGACGAGACACAACGATGTGATGCTGTTTGGAGCAGGAGACGTGTATCAACAGGACAGGGTGATGCAGGTAACGGTGGCGTTCAACCACTTTGGGAACGGATTGATACAGAGGATGCCGAGGTGCAGACATGGGTGGTTCCACGTGGTGAACAACGACTACCATAACTGGATAATGTACGCCATCGGAGGAACGGCGAATCCGACCATACTCAGCCAAGGAAACCGGTTCAGTGCTCCGAACAACGAAGCAGCGAAGCAGGTTACAAACAGAGTGAGTGCGCCGGAATCGGCGTGGAAAAACTGGCGGTGGCAGACGGAGCATGACGAGTTTGTGAACGGAGCTTTTTTTGTACCGTCGGGAACACCTATAACTGAATCTAAATTCGACAAAGAGGGTTTGATACCACCCAGACCAGGGATTGAAGCTCCCGAACTTGCGCGCTTTTCGGGTCAGATCAAGTGCAAGGTCGGCAACCCTTGTTAG 1344 0.5126 MGKIMTESAARVTLLLMATLAITVPCLVDANIGDFDDYLREKAKQARRVALEAYEPNPLKVTSELNMHVHLAMNEAKNSSRGRDLSEKRHKGPCLTTNPIDRCWRCDKDWEKNRFKLAECAMGFGRKTTGGLGGKIYVVTDSSDVDVANPKPGTLRYAAIQKEPLWIIFAHSMVIKLKQELLVNSDKTIDGRGANIHIKSGGGLTLQFVKNVIIHNLRIRNIKAKKGGLVRDAPDHVGLRTRSDGDAISIFGSTNVWIDHISMSNADDGLVDAIMGSTAITISNCHMTRHNDVMLFGAGDVYQQDRVMQVTVAFNHFGNGLIQRMPRCRHGWFHVVNNDYHNWIMYAIGGTANPTILSQGNRFSAPNNEAAKQVTNRVSAPESAWKNWRWQTEHDEFVNGAFFVPSGTPITESKFDKEGLIPPRPGIEAPELARFSGQIKCKVGNPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1918 447 Gene3D - 97 440 IPR012334 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Prci3g1918 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Prci3g1918 447 SMART amb_all 172 369 IPR002022 -
Prci3g1918 447 SUPERFAMILY Pectin lyase-like 98 414 IPR011050 -
Prci3g1918 447 Pfam Pectate lyase 178 363 IPR002022 -
Prci3g1918 447 PANTHER PECTATE LYASE 18-RELATED 46 445 IPR045032 GO:0030570
Prci3g1918 447 Pfam Pectate lyase, N terminus 31 81 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1918 Prci-Chr3 33642671 33644427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1918 12 447 Polysaccharide Lyase AT1G14420 54.667 6.84e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1918 K01728 - gmx:100780236 583.178