Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1917 ATGGAAAAAGAAATGGCACTTAGAATTACAGTATCGTTAGTCGTCGCATTATTGGCCATTACAATTCCATGCCTCGAGGCTAACATTGGAGAGGTTGATGAGTATCTCCAAGAAAAAGCAACGCAAGCCCGCAGAGCAGCTCTCGAAGCCTACGAGGCCGATCCTTTAAACGTCACGTCCGAGCTTAACATGCACGTTCATCTAGCGATGGATGATGCCAACAGCAGCAGAGGGAGGGACCTGAGGGAGAACAAGAATCACAGGGAGAAATGCAAGGCCACCAACCCAATAGACCGATGCTGGAGATGCGACCCAAATTGGGAGAAGAATAGATTTAGGTTAGCCGAATGCGCCATGGGTTTCGGCCGCAAGGCCACCGGAGGGTTGGGTGGTAGGATCTACGTCGTCACGGATGATTCCGATCTCGACATGGTTAACCCGAAACCCGGAACTCTGAGGCACGGGGTGATCCAGAAGGGGCCTCTCTGGATCATATTCTCCCGCAGCATGGTGATCAAGTTGAAGGAGGAGTTGATGGTGTCATCGGACAAGACCATCGACGGTCGCGGAGCCAATGTTCAGATCAGAAATGGCGGGGGCATCACTTTGCAGTTCGTCAATAACGTCATCATCCACAACCTTCGCATTCGCAACATCAAACCTAAGGCGGGTGGCACGATAAGGGACTCCGTGGATCATATCTCTGTGAGAACCAGAAGTGACGGCGATGCCATCGGCCTCTTCGGGGCCACCAATATTTGGATTGATCATATTTCCCTCGCCAACGCCGAGGACGGCCTCATCGACGTCATCATGGGTTCCACCGGCGTTACCGTCTCAAATTGCCACTTGACCAGACACAACGATGTGATGCTGTTCGGAGGTGGTGAGGTGTATCATCAGGACAAGGTGATGCAGATAACGGTGGCGTTCAACCACTTCGGGAACGGATTGATACAGAGGATGCCGAGATGCAGATACGGGTTCTTCCACGTGGTGAACAACGACTACACTCACTGGATAATGTACGCCATCGGAGGAAGCTCGAACCCCACTATACTGAGCCAAGGAAACCGATTCATTGCTCCGAACAACGATGCGACGAAGGAGATTACGAATAGGGTGGGGACGCCGCCAGCAGTGTGGAAAGACTGGCAATGGCAGTCGGAGAATGACCAGTTGGATAACGGCGCCATTTTCGTTCAATCGGGAAGGCCGATAACTTCCATCGATAGAGGGAGCTTAATCACGCCGAGACCTGGGATTGAAGCTCCGTTGCTTGCACGATATTCGGGTGCGCTCAGGTGCAGGCCTGGTAAGCCTTGTTAG 1329 0.5245 MEKEMALRITVSLVVALLAITIPCLEANIGEVDEYLQEKATQARRAALEAYEADPLNVTSELNMHVHLAMDDANSSRGRDLRENKNHREKCKATNPIDRCWRCDPNWEKNRFRLAECAMGFGRKATGGLGGRIYVVTDDSDLDMVNPKPGTLRHGVIQKGPLWIIFSRSMVIKLKEELMVSSDKTIDGRGANVQIRNGGGITLQFVNNVIIHNLRIRNIKPKAGGTIRDSVDHISVRTRSDGDAIGLFGATNIWIDHISLANAEDGLIDVIMGSTGVTVSNCHLTRHNDVMLFGGGEVYHQDKVMQITVAFNHFGNGLIQRMPRCRYGFFHVVNNDYTHWIMYAIGGSSNPTILSQGNRFIAPNNDATKEITNRVGTPPAVWKDWQWQSENDQLDNGAIFVQSGRPITSIDRGSLITPRPGIEAPLLARYSGALRCRPGKPC 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1917 442 PANTHER PECTATE LYASE 18-RELATED 43 440 IPR045032 GO:0030570
Prci3g1917 442 Pfam Pectate lyase, N terminus 28 77 IPR007524 GO:0030570
Prci3g1917 442 Gene3D - 94 433 IPR012334 -
Prci3g1917 442 SMART amb_all 169 366 IPR002022 -
Prci3g1917 442 Pfam Pectate lyase 175 360 IPR002022 -
Prci3g1917 442 SUPERFAMILY Pectin lyase-like 95 407 IPR011050 -
Prci3g1917 442 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Prci3g1917 442 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Prci3g1917 442 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Prci3g1917 442 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Prci3g1917 442 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Prci3g1917 442 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Prci3g1917 442 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1917 Prci-Chr3 33638798 33640631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1917 16 442 Polysaccharide Lyase AT1G14420 56.208 1.93e-177 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1917 K01728 - gmx:100785801 593.578