Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1916 ATGACGGATGGTCATCTCTTTAACAACATCGCTCTCGGTGGCCGTGGAGGAACTAATCCAGGGCAGATGAAAATATATTCTGGAGGGATTTTATGGAAAAGACAGGGTGGCGGTAAAGCAATTGAGGTTGATAAAGCTGACATAATGGGAGTGACTTGGATGAAGGTCCCAAGAACTAATCAGCTTGGTGTTCGAATCAAAGATGGATTGTTCTACAAGTTCACTGGGTTCCGTGACCAGGATGTGGCAAGTTTGACTAGCTTTTTCCAAAATACATGTGGGATTACACCAGAGGAAAAGCAGCTTTCTGTTAGTGGGCGTAACTGGGGAGAAGTTGATCTAAATGGAAATATGCTGACTTTCATGGTTGGCTCAAAGCAAGCTTTTGAGGTATCTTTAGCAGATGTCTCTCAAACACAGCTTCAAGGGAAAAATGATGTGATCTTGGAGTTTCATGTGGATGACACGACTGGGGCTAATGAGAAAGATTCTTTGATGGAGATAAGTTTTCACATACCAAATTCCAACACCCAATTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGATAAAATCATGTCTATGGCGGACGTCGGTGCTGGAGGTGAAGATGCTGTTGTTACGTTTGAGGGTATTGCTATTCTAACACCAAGGGGGCGGTACAGTGTTGAACTACATCTGTCATTCTTGCGGCTTCAAGGACAAGCTAATGATTTCAAAATCCAGTATAGCAGTGTTGTTCGCCTATTTTTACTTCCCAAGTCAAATCAGCCACACACCTTTGTTGTTATTAGTCTTGATCCGCCAATTCGTAAAGGACAAACTTTGTACCCACACATTGTGATGCAGTTTGAAACTGATTACGTAGTTCAAAGCACGTTGTCAATGGGTGAAGATCTTTACAACAGTAAGTACAAGGACAAGTTGGAGCTTTCATATAAGGGGCTCATCCATGAAGTTTTCACAACAATATTGCGTGGTTTGTCTGGTGCCAAAGTTACCAAGCCAGGAAAATTCAGGAGCTGTCAAGATGGTTATGCTGTGAAATCGTCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTTTACCTAAACCTCCTACCCTCATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATACTGCTGGGGGTTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAAACTGAGCAGGAGCATCTATTCCGTAATATTCAGAGAAATGAATACCACAATCTTTTTGACTTTATCAGTTCAAAAGGCTTGAAAATTATGAACCTTGGAGGTGTCCAAGCTACTGATGGTGTCGCCGCTGTTCTTCAAGAAGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATAAAAAATGCAGCTGGTGGAGATGAGAGTGATGAAGAGGATGAGGATTTTGTTGCCGATGAGGATGATAGTGGTTCTCCGACTGATGATTCTGGAGAAGACGAGTCTGATGCAAGTGAAGGTGGTGGGAAAGAGAAGCCCGCCAAAAAGGAATCAAAGAAGGAACTGTCTTCTAAGGCATCTACTTCAAAGAAGAAACCTAAAGATGGAGACGAAGATGGGAAAAAGAAAAAACAGAAGAAGAAAAAGGATCCTAATGCGCCAAAGAGGGCATTGTCTGGTTTCATGTTCTTCTCCCAAATGGAGAGAGAGAATCTGAAGAAAAGTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAGAAGAAGATCAGGTACGCGGACGAGAAGGAACCGTATGAAGCAAAAGCTCGTGCAGATAAAAAACGTTACAAGGATGAGATCAGTGGGTACAAGAATCCGCAACCTATGAACGTAGACTCAGGAAACGAATCTGATAGTACTTGA 1929 0.4204 MTDGHLFNNIALGGRGGTNPGQMKIYSGGILWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVRIKDGLFYKFTGFRDQDVASLTSFFQNTCGITPEEKQLSVSGRNWGEVDLNGNMLTFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSTLSMGEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHTAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVQATDGVAAVLQEDDDDAVDPHLERIKNAAGGDESDEEDEDFVADEDDSGSPTDDSGEDESDASEGGGKEKPAKKESKKELSSKASTSKKKPKDGDEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKSNPGISFTDVGRVLGEKWKKKIRYADEKEPYEAKARADKKRYKDEISGYKNPQPMNVDSGNESDST 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1916 642 SMART hmgende2 555 627 IPR009071 -
Prci3g1916 642 CDD HMG-box_AtSSRP1 552 629 - -
Prci3g1916 642 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Prci3g1916 642 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 611 - -
Prci3g1916 642 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Prci3g1916 642 MobiDBLite consensus disorder prediction 469 563 - -
Prci3g1916 642 Gene3D - 199 338 - -
Prci3g1916 642 MobiDBLite consensus disorder prediction 505 547 - -
Prci3g1916 642 Gene3D - 96 179 IPR038167 -
Prci3g1916 642 SUPERFAMILY PH domain-like 206 440 - -
Prci3g1916 642 SMART Rtt106_2 348 441 IPR013719 -
Prci3g1916 642 MobiDBLite consensus disorder prediction 476 504 - -
Prci3g1916 642 Gene3D - 339 447 IPR011993 -
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Prci3g1916 642 FunFam Fact complex subunit ssrp1 199 338 - -
Prci3g1916 642 FunFam FACT complex subunit SSRP1 96 179 - -
Prci3g1916 642 Pfam HMG (high mobility group) box 556 626 IPR009071 -
Prci3g1916 642 MobiDBLite consensus disorder prediction 599 642 - -
Prci3g1916 642 SUPERFAMILY HMG-box 543 627 IPR036910 -
Prci3g1916 642 MobiDBLite consensus disorder prediction 628 642 - -
Prci3g1916 642 FunFam FACT complex subunit SSRP1 339 448 - -
Prci3g1916 642 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Prci3g1916 642 FunFam FACT complex subunit SSRP1 1 93 - -
Prci3g1916 642 MobiDBLite consensus disorder prediction 599 623 - -
Prci3g1916 642 FunFam FACT complex subunit SSRP1 540 635 - -
Prci3g1916 642 Gene3D - 1 92 IPR011993 -
Prci3g1916 642 CDD PH2_SSRP1-like 342 441 - -
Prci3g1916 642 Gene3D High mobility group box domain 539 636 IPR036910 -
Prci3g1916 642 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 626 IPR009071 -
Prci3g1916 642 CDD PH1_SSRP1-like 207 340 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1916 549 626 ARID Transcription Factor Family AT1G04880 39.744 3.12e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci3g1916 POB3_N 2.6e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1916 K09272 - qsa:O6P43_004518 1073.92