Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1886 ATGGAGGAGAAGATTCACGAAATTGATAGTTTTGATGATGTTCTGCTGCCTGGTTTTCGGTTCCATCCGACGGATGAGGAGCTTGTTGACTTTTACCTCAAGAAAAAAATACAGCAGAAGACCCTGGCTGTTGAGATCATTAAGCAAGTGGACATTTACAAGTACGACCCATGGGATCTTCCAAAGATGGCAAGCAGTACCGGGGAGAAAGAGTTGTACTTCTACTGTCAAAGGGACCGAAAATACAGAAACAGCGTCCGGCCAAATCGGGTGACCAGGGCCGGGTTCTGGAAGGCCACAGGAACTGACCGCCCTATATACTCCTCCAAGGGAAAGTGCATCGGTTTAAAGAAGTCCCTCGTGTTCTACAGAGGCAGAGCCGCCAGAGGCATCAAAACTGAGTGGATGATGCACGAGTTTCGCCTTCCTTCTCTTTCTCAAGCTACTGTTCCCAAAACCCTCTCTCCAACTGAGTCGTGGGCAATTTGTAGGATATTCACGAAAACCAACTCACACAAGCCTTCATCTCATTCGTACCCCTGGACCACTCCGTTCCCTGAAAGCATGCCTCAGGGTGGTGGTGCCGCAGCCTCCTGCAATCACTTCAGTCCAGAAAATCTGTCTTGCACGAGAGAAACTGTCTCCGGGGGGAATTTCTCAGCTTCAGATGTTCCCTATGACGCCCGACTCGGTGTTTTGAACGGTGACCTCGGTGACAGCTTCAAGTTCTCCGAGCCGGCAGCATCAGGCTGCATGCTTTTGAACCCGGACAGCGAAGGACTTGAAGGGGCTCACCAGCAGTTTAGTGGCTTATCAATGAGCGTACCTCAGGATATGCGAGTGAATATGAACAGAGAAACAGGGTTTCCCATGACCGTGTCTGCTTCTAGTGATGCTTGGAAGTCTCCTCTGCTATGGGACTTCCCCTTGTTCGACTGA 939 0.5027 MEEKIHEIDSFDDVLLPGFRFHPTDEELVDFYLKKKIQQKTLAVEIIKQVDIYKYDPWDLPKMASSTGEKELYFYCQRDRKYRNSVRPNRVTRAGFWKATGTDRPIYSSKGKCIGLKKSLVFYRGRAARGIKTEWMMHEFRLPSLSQATVPKTLSPTESWAICRIFTKTNSHKPSSHSYPWTTPFPESMPQGGGAAASCNHFSPENLSCTRETVSGGNFSASDVPYDARLGVLNGDLGDSFKFSEPAASGCMLLNPDSEGLEGAHQQFSGLSMSVPQDMRVNMNRETGFPMTVSASSDAWKSPLLWDFPLFD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1886 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 204 - -
Prci3g1886 312 Gene3D NAC domain 24 173 IPR036093 GO:0003677|GO:0006355
Prci3g1886 312 ProSiteProfiles NAC domain profile. 15 168 IPR003441 GO:0003677|GO:0006355
Prci3g1886 312 SUPERFAMILY NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Prci3g1886 312 FunFam NAC domain-containing protein 35 24 171 - -
Prci3g1886 312 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1886 Prci-Chr3 33359892 33361309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1886 2 297 NAC Transcription Factor Family AT5G39820 45.482 7.27e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci3g1886 NAM 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1886 - - qsu:112040201 329.717