Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1882 ATGGGAAGGCCGCCTTGTTGTGATAAGGAAGGCGTCAAGAAAGGACCTTGGACGCCTGAAGAAGACATCTTGTTGGTCTCCTACATTCAGCAGCATGGCCCTGGAAATTGGAAGGCTGTTCCCGCCAATACAGGGTTGTCGCGGTGCAGCAAGAGTTGCAGACTTAGATGGACTAATTATCTGAGGCCAGGAATTAAGCGCGGCAATTTCACCGACCAAGAAGAGAAGATGATCATCCATCTTCAAGCTCTTCTGGGCAATAGATGGGCTGCGATAGCTTCGTACCTTCCGCAGAGAACAGATAACGACATAAAAAACTATTGGAACACCCACTTGAAGAAGAAGCTTAGGAAAATGCAGATGGCTCTCGAAGGAGACGGCACAAGCGATGGGTTTTCGGCTTCGCAAGCAATGCCTAGAGGACAGTGGGAAAGAAGGCTCCAAACTGACATCCAAACGGCTAAGAGAGCTCTTCGCGAGGCACTGTCACCGCATAAGCCTTGTGGCGCATTTCAATCCTACCCCTCTGATATTGGCTCCTCCTCTCTCGCTTCTGCAAAACCAACCCCATCCTTATGCTATGCGTCGACCGCTGAAAACATAGCTCGTTTGCTGAAGGAATGGAAGAAAAATCCACCAAAGAAAACTCACTCTCGCGGTAACTCGACCATGACTCAGAATTACTCCGCCGGAAACTTGGCTACTTGTAGCAAAGAAGCCCCAAGTGACGAATCCAACAAGGGAAGCAGCTTTGAATCATGCGAGGCGTTTGAGTCATTGTTCGGGTTGGAGTCTTTGGATTCTTCGAATTCTGAGTTCTCGCAATCTGTGTCTCCTGACCCTGAACCAACCACTCTTTTCCAAGATGAAAGCAAGCCGGAGTGTGGTGCAGAATTGCAATTTTCTTTTCTTGAGAAATGGCTTCTAGACGAGGTTGCTTTGCCAGGAATATGTTAG 957 0.4848 MGRPPCCDKEGVKKGPWTPEEDILLVSYIQQHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLRKMQMALEGDGTSDGFSASQAMPRGQWERRLQTDIQTAKRALREALSPHKPCGAFQSYPSDIGSSSLASAKPTPSLCYASTAENIARLLKEWKKNPPKKTHSRGNSTMTQNYSAGNLATCSKEAPSDESNKGSSFESCEAFESLFGLESLDSSNSEFSQSVSPDPEPTTLFQDESKPECGAELQFSFLEKWLLDEVALPGIC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1882 318 CDD SANT 69 112 IPR001005 -
Prci3g1882 318 CDD SANT 16 61 IPR001005 -
Prci3g1882 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Prci3g1882 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci3g1882 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Prci3g1882 318 MobiDBLite consensus disorder prediction 269 285 - -
Prci3g1882 318 Gene3D - 68 126 - -
Prci3g1882 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci3g1882 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci3g1882 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci3g1882 318 SMART sant 13 63 IPR001005 -
Prci3g1882 318 SMART sant 66 114 IPR001005 -
Prci3g1882 318 Gene3D - 13 66 - -
Prci3g1882 318 FunFam Transcription factor MYB30 68 126 - -
Prci3g1882 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci3g1882 318 MobiDBLite consensus disorder prediction 269 291 - -
Prci3g1882 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci3g1882 318 MobiDBLite consensus disorder prediction 208 230 - -
Prci3g1882 318 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1882 Prci-Chr3 33330328 33332187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1882 1 311 MYB Transcription Factor Family AT5G62470 49.719 1.87e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g1882 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1882 K09422 - gmx:778080 416.387