Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1880 ATGGATTTAACCCCCGCAGTCGCCAACAACACCACCGCCTCCACTACACCTACTAGTACGAAATCCCCGGAACGTGACAGTGAAACGCCCACCCGGATCCAGACAGCCGCCAAGCCCTTGTCCTACTCCAACGGCGTCCTCAAGCGCCACCACCACCACCGCCTGGCCAGCCAGCCCCTGCCCGTCACGTACAAGGAGTGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCACGCCCTCGACGGTTGTGGCGAGTTCATGGCCTCTCCCACCGCCAGCCTCGCCGACCCCAGCTCCATCAAATGTGCCGCATGCGGCTGCCACCGCAATTTCCACCGCCGTGAGCCCGAAGAGCCTATGTCCACGACTCACGTCATCGAGTTCCAGTCCCACCATCGGCACCATCCCCCGCCGCCCCTGCCCTTTCAGGTTTCCAATCGCAGCCCCAATTCGGCGTCGCCGCCTCCGATCTCCTCTTCTTACTACCCGTCCGCGCCCCATATGCTTCTGGCTCTCTCTGCGGCCGGGATACAAGCGCCGCCGGAGAGCGCGGCTGCTCCCGCTAACGCTCTGGCAACGCCGAGCCCGAATGCGAGGAAGCGGTTCAGGACCAAGTTCACCCAGGATCAGAAGGAAAAGATGTACCATTTCGCGGAGAAGGTGGGGTGGAAGATGCAGAAGAGGGACGAACAATTGGTTCATGAGTTCTGCAATGAGGTTGGGGTGGACAGGGGGGTGTTGAAGGTTTGGATGCACAACAACAAGAACACTTTCGGCAGGAGAGATTCTGCTAATCATGACGGTAGGAACGCTCTAGAGCAAGACCCTCGTGCCCTCACCACTGAAATCCACGCCAACAACGACAACGGCAGCGCGCAGGATGCGAATCATCACCTCTACACCAACGATAATAGTGGGGCAAACCTTGGTACTAATGGGTCCTCTTCGTCCTCTTGA 957 0.5925 MDLTPAVANNTTASTTPTSTKSPERDSETPTRIQTAAKPLSYSNGVLKRHHHHRLASQPLPVTYKECLKNHAASLGGHALDGCGEFMASPTASLADPSSIKCAACGCHRNFHRREPEEPMSTTHVIEFQSHHRHHPPPPLPFQVSNRSPNSASPPPISSSYYPSAPHMLLALSAAGIQAPPESAAAPANALATPSPNARKRFRTKFTQDQKEKMYHFAEKVGWKMQKRDEQLVHEFCNEVGVDRGVLKVWMHNNKNTFGRRDSANHDGRNALEQDPRALTTEIHANNDNGSAQDANHHLYTNDNSGANLGTNGSSSSS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1880 318 SUPERFAMILY Homeodomain-like 193 260 IPR009057 -
Prci3g1880 318 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
Prci3g1880 318 MobiDBLite consensus disorder prediction 256 318 - -
Prci3g1880 318 Gene3D - 188 259 - -
Prci3g1880 318 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 115 IPR006456 -
Prci3g1880 318 MobiDBLite consensus disorder prediction 1 39 - -
Prci3g1880 318 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 257 - -
Prci3g1880 318 MobiDBLite consensus disorder prediction 280 318 - -
Prci3g1880 318 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Prci3g1880 318 FunFam Zinc-finger homeodomain protein 2 187 260 - -
Prci3g1880 318 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Prci3g1880 318 MobiDBLite consensus disorder prediction 127 158 - -
Prci3g1880 318 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1880 Prci-Chr3 33299883 33301453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1880 7 255 ZF-HD Transcription Factor Family AT5G15210 53.150 1.38e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci3g1880 ZF-HD_dimer 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1880 - - qsa:O6P43_009085 385.571