Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1878 ATGATGCAGACGACAAGTCAAAATGTGTGGAGATCGATTACTGAAAGAGAACAGCCAGAAACCCACGAGCGAGCTCTTCCTCTTCCCTTCGCAAAACTTGCAGAAAATTACCCTCCTGGTTTTCTTAGAAAGGTATTGGCAGAGATTATAGGAACATATCTGTTGGTGTTTGTGGGAAGTGGGGCTGCTGCCCTGAATGCATTTGATGAACAGAAAATATCAAAACTAGGAGCTTCACTTGCAGGAGGATTCATTGTGATTGTGATGATCTATGCTATCGGGCACATCTCTGGTGCTCACATGAACCCAGCAGTCTCGTTTGCCTTCGCCGCCGTGAGACATTTTCCATGGAAACAGGTCCCATTATACGTGGCAGCCCAATTGACAGGAGCCGTTTCTGCCTCTTTCACATTGCGGCTGATATTGAACCCAGTAACACAGCTAGGGACAACCTCGCCTTCTGGAAGTGACGTTCAAGCTCTTATCATGGAGATCGTGGCAACGTTCACTATGATGTTCGTCGCCTCCGCCGTGTCAACTGATGCAAAAGCTGTTGGAGAGCTCGCAGGAGTTGCAGTAGGCTCTTCCGTGTTCATTGCAGGCATCCTTGCAGGACCAATATCAGGGGGATCAATGAACCCAGCAAGAACCCTAGGTCCTGCCATAGCAAGCGGATCCTATAGAGGACTTTGGGTCTATCTGGTTGGACCAGTTATTGGGGCACTTTTGGGAGCATGGTCTTACATTACTATTAAAGAGACAGATGAGTCAGCTTTGGCCACTTCACTGCTATCATTCCCATTGGAGCTACGCTCAAAGAATAGGGAAACTAGGAAAGTTAAAAACAAAGACAGCCCACAAATTATGAGTGAAAATGTATAA 882 0.4683 MMQTTSQNVWRSITEREQPETHERALPLPFAKLAENYPPGFLRKVLAEIIGTYLLVFVGSGAAALNAFDEQKISKLGASLAGGFIVIVMIYAIGHISGAHMNPAVSFAFAAVRHFPWKQVPLYVAAQLTGAVSASFTLRLILNPVTQLGTTSPSGSDVQALIMEIVATFTMMFVASAVSTDAKAVGELAGVAVGSSVFIAGILAGPISGGSMNPARTLGPAIASGSYRGLWVYLVGPVIGALLGAWSYITIKETDESALATSLLSFPLELRSKNRETRKVKNKDSPQIMSENV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1878 293 Pfam Major intrinsic protein 41 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 NCBIfam MIP family channel protein 47 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 SUPERFAMILY Aquaporin-like 36 255 IPR023271 -
Prci3g1878 293 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Prci3g1878 293 PRINTS Major intrinsic protein family signature 163 181 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 CDD MIP 43 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci3g1878 293 Gene3D Glycerol uptake facilitator protein. 5 261 IPR023271 -
Prci3g1878 293 PANTHER AQUAPORIN NIP2-1 23 264 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1878 Prci-Chr3 33255918 33258975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1878 43 285 Major Intrinsic Protein MIP AT5G37820 49.187 4.89e-75 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1878 K09874 - qsa:O6P43_009088 360.533