Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1863 ATGGGTCGGTCACCATGCTGCGACAAGGTGGGCTTAAAGAAAGGGCCATGGACTCCTGAGGAGGATCAGAAACTTTTAGCTTATATCGAAGAACACGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGTAAGAGCTGCAGACTGAGATGGACCAATTATCTTAGGCCTGATATAAAGAGAGGAAAGTTCAGCTTGCAAGAAGAGCAAACCATCATTCAACTCCATGCCCTCCTAGGGAACAGGTGGTCGGCTATAGCAACACACTTGCCCAAGAGAACAGATAATGAGATCAAGAACTACTGGAATACGCATCTTAAGAAAAGGTTAGCCAAAATGGGAATTGATCCTGTGACCCACAAGCCCAAGAATGATGCCCTTCTCTCCATCGATGGCCAATCCAAGAGTGCTGCCAACCTTAGTCACATGGCTCAATGGGAGAGTGCTAGGCTTGAAGCTGAAGCAAGGTTGGTTAGGGAATCAAAACTACGTTCGCAATCATTGCAGCATCAGCTTTGCAGCTCTGGGTTTTCATCTTCATCATCTGCTTCAACCCCAGCCCAAGCTGGGAATAAACCAGAGGGACCACCTATTTCCTCACGCTCTCTAGATGTGCTTAAGGCGTGGAATGGAGGCTGGTTGAAATCTACTGAAGGCCATAATGTTGGTGGCGAACTTGAATCCCCTTCGTCTTCCCTGACTTTCTCCGGGAACGCTCCACCAGTTATGACCAGTGGACTTGGAGAGAGTACAATGCCTATGATTGAGTTTGTGGGCTCTTCAGGTTCTTCTGAGACAGGAATTGTGAAAGAGGAAGGTGAGCAAGAGTGGAAAGGTTATGAAAGTTCAGTCCATCTGCCGGAATACAAAGATGGTATCGAGAATTCCATGTCTTTTGCGTCTAGCCTGCATGAGTTGACGATGTCCATGGAAGGCACGTGGACGTCCGAGTCTCTCAGGACCAGTACTGATGCCATTGCTGAGGAAGGATTCACCAATCTTTTGCTTAATACTAACTCCGATGACCGAAGTTTGTCGGAGGAGGGCGGAGGTGAGTCTAATAACTGTGAAGGTAATGGAGGCAGTGGGGGTGACCTCTATGAAGATAACAAGAATTACTGGAACAGCATTCTTAATTTAGTGAACTCTTCCCCTTCTGACTCTCCCATGTTCTGA 1194 0.4782 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSIDGQSKSAANLSHMAQWESARLEAEARLVRESKLRSQSLQHQLCSSGFSSSSSASTPAQAGNKPEGPPISSRSLDVLKAWNGGWLKSTEGHNVGGELESPSSSLTFSGNAPPVMTSGLGESTMPMIEFVGSSGSSETGIVKEEGEQEWKGYESSVHLPEYKDGIENSMSFASSLHELTMSMEGTWTSESLRTSTDAIAEEGFTNLLLNTNSDDRSLSEEGGGESNNCEGNGGSGGDLYEDNKNYWNSILNLVNSSPSDSPMF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1863 397 CDD SANT 69 112 IPR001005 -
Prci3g1863 397 Gene3D - 69 116 - -
Prci3g1863 397 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci3g1863 397 CDD SANT 16 61 IPR001005 -
Prci3g1863 397 MobiDBLite consensus disorder prediction 180 195 - -
Prci3g1863 397 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci3g1863 397 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci3g1863 397 Gene3D - 13 66 - -
Prci3g1863 397 SMART sant 66 114 IPR001005 -
Prci3g1863 397 SMART sant 13 63 IPR001005 -
Prci3g1863 397 FunFam MYB-related transcription factor 13 66 - -
Prci3g1863 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci3g1863 397 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci3g1863 397 MobiDBLite consensus disorder prediction 343 366 - -
Prci3g1863 397 MobiDBLite consensus disorder prediction 343 373 - -
Prci3g1863 397 FunFam MYB transcription factor 69 116 - -
Prci3g1863 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 191 - -
Prci3g1863 397 MobiDBLite consensus disorder prediction 180 207 - -
Prci3g1863 397 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci3g1863 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1863 Prci-Chr3 33083883 33086397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1863 1 397 MYB Transcription Factor Family AT3G01140 53.511 3.44e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g1863 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1863 K09422 - tcc:18601559 591.652