LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g1849	ATGGGTTGCATTAACTCCAAAAATTTGGTTGCCGGAGATTCACCCGTGCACTCGAAGGTGCGCACCGACAATGGGTCTGCGATTGTGGAACCTCCGTCGCGATCCCGATCGGGGATGTTAGCTTCTGCCGGTGAAGGGGATCGAAAATCGGAGGATTGCAATCGAGATGGGAAGAAGTCCGGGAAGGATAGCTCCAAAGGAAGTGGGATTTTCAGTTTCAAGATGGGGCTTTCGCATCGGATAGTGGAAGCGGAGCTGAATGCCGCTGGATGGCCCCCTTGGCTCACAGCTGCTGCGGGGGAAGCCATTCATGGATGGGTACCCCTCAGGGCAGATTCTTTTGAGAAATTAGAAAAGATTGGACAAGGCACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAGGATGTTTGCTTTGAAGAAGGTGCGGTTTGACAATTTTCAGCCTGAGAGCGTGAGGTTCATGTCTAGAGAAATTACAATTCTTCGCAGGCTTGATCATCCAAACATCATGAAATTGGAGGGGGTTATTACATCCCGACTATCAAGTAGCATATACCTTGTGTTTGAATATATGGAGCATGATCTTGCAGGACTAGTATCCTGTCCTGATATAACGTTCAGTGATTCACAGGTGAAATGTTACATGAGGCAACTGCTGAGTGGACTTGAGCACTGTCACCTACGTGGTATCATCCATCGGGATATTAAAGTATCCAATATATTAGTGAATAATGATGGTATTCTCAAGATAGGCGATTTTGGATTGGCAAATACAATTAGCTCAAGTAACAAGCATCCATTAACCAGTCGTGTAGTGACTCTATGGTACCGCCCTCCTGAACTCTTGATGGGATCAACCAACTATGGAGTATCAGTGGATCTGTGGAGTGTGGGTTGTGTATTTGGGGAACTTTTTCTGGGGAAACCTATCCTCAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTTAAGCTTTGCGGTTCACCGCCTGATGAATTCTGGAAGAAGTGCAAGCTTCCCCATGCAACAATGTTTAAACCTCAGATTACTTACGAAAGCTCTTTATCGGAGAGGTTTCTGGGTATTCCAGAAACTGCTCTAAACCTAATGCAGACTCTATTATCCGTTGATCCCCGTGAGCGTGGGACTGCCTCTTCTGCCCTGATGTCTGAGTATTTCAGCACCAAGCCATTTGCTTGTGATCCATCAAGCCTGCCAAAATATCCACCCAACAAAGAAATGGATGCTAAAAACCGGGAAGAGGTTCGCAGGAAAAAGACTGATGGTAAAGCGCGTGAGGCTGCAACATCAAGAAAGCAAAGACGAGAAAAACAGAACAATTCTCAAAAAGTTGTTAAAGATGATGTTAAATCATATCTTCACAAGGGAAAAGGAGAAGCTATGCAGAAGGAGCCATCAAAGCCTTCCATAGAAATAATGTCACAAACCTCACAGATCAATGGCGTGCCTCGTGGCTTCAGTATATTAGCAGGACCAGCACCAGCCTCAGGAGCTAGTGGCTTTGCATGGGCAAAAAGAAGAAAACCAGAGGTTTCATCCACATTATCAGATGGTTCAAAAAGCAAAATCAGCGCACTGGATCCAACTTTTGCAAAAGGCACATATAATTTAACCAGACATGTGATCGATGTCGCAGAAAGAAAATTTAAGGGCAATACAGGCCATCAGACTAAGTCTGGTCAGCCGGAACATATTGATGCATCCGATACATATTCAAATTTATCAACGAATTTTGATTCCATGGAAACACCGGATAGTGTGACGGATACTCAGGGCCACGAAAAGCTTGGCCATGAAAGTACATGCCCTGCAGCTGGCAAATCAAGGTTAGGAAGATAA	1875	0.4496	MGCINSKNLVAGDSPVHSKVRTDNGSAIVEPPSRSRSGMLASAGEGDRKSEDCNRDGKKSGKDSSKGSGIFSFKMGLSHRIVEAELNAAGWPPWLTAAAGEAIHGWVPLRADSFEKLEKIGQGTYSSVFRAREVETGRMFALKKVRFDNFQPESVRFMSREITILRRLDHPNIMKLEGVITSRLSSSIYLVFEYMEHDLAGLVSCPDITFSDSQVKCYMRQLLSGLEHCHLRGIIHRDIKVSNILVNNDGILKIGDFGLANTISSSNKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFGELFLGKPILKGRTEVEQLHKIFKLCGSPPDEFWKKCKLPHATMFKPQITYESSLSERFLGIPETALNLMQTLLSVDPRERGTASSALMSEYFSTKPFACDPSSLPKYPPNKEMDAKNREEVRRKKTDGKAREAATSRKQRREKQNNSQKVVKDDVKSYLHKGKGEAMQKEPSKPSIEIMSQTSQINGVPRGFSILAGPAPASGASGFAWAKRRKPEVSSTLSDGSKSKISALDPTFAKGTYNLTRHVIDVAERKFKGNTGHQTKSGQPEHIDASDTYSNLSTNFDSMETPDSVTDTQGHEKLGHESTCPAAGKSRLGR	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g1849	624	FunFam	probable serine/threonine-protein kinase At1g54610	197	438	-	-
	Prci3g1849	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	234	246	IPR008271	GO:0004672\|GO:0006468
	Prci3g1849	624	ProSitePatterns	Protein kinases ATP-binding region signature.	120	143	IPR017441	GO:0005524
	Prci3g1849	624	MobiDBLite	consensus disorder prediction	566	599	-	-
	Prci3g1849	624	SUPERFAMILY	Protein kinase-like (PK-like)	107	404	IPR011009	-
	Prci3g1849	624	ProSiteProfiles	Protein kinase domain profile.	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g1849	624	Gene3D	Phosphorylase Kinase; domain 1	101	196	-	-
	Prci3g1849	624	MobiDBLite	consensus disorder prediction	45	63	-	-
	Prci3g1849	624	MobiDBLite	consensus disorder prediction	408	480	-	-
	Prci3g1849	624	Gene3D	Transferase(Phosphotransferase) domain 1	197	438	-	-
	Prci3g1849	624	PANTHER	CELL DIVISION PROTEIN KINASE	112	403	-	-
	Prci3g1849	624	MobiDBLite	consensus disorder prediction	560	624	-	-
	Prci3g1849	624	MobiDBLite	consensus disorder prediction	417	476	-	-
	Prci3g1849	624	CDD	STKc_CDK9_like	114	398	-	-
	Prci3g1849	624	Pfam	Protein kinase domain	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g1849	624	SMART	serkin_6	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g1849	624	MobiDBLite	consensus disorder prediction	1	65	-	-
	Prci3g1849	624	FunFam	probable serine/threonine-protein kinase At1g54610	101	196	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g1849	Prci-Chr3	32899124	32905432	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g1849	106	438	Core Cell Cycle Gene Families	AT5G10270	45.115	1.73e-106	329

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Prci3g1849		Pkinase	1.2e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g1849	-		-	qsa:O6P43_004446	791.956