LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g1848	ATGGGTTGCATTAACTCCAAAAATTTGGTTGCCGGAGATTCACCCGTGCACTCGAAGGTGCGCACCGACAATGGGTCTGCGATTGTGGAACCTCCGTCGCGATCCCGATCGGGGATGTTAGCTTCTGCCGGTGAAGGGGATCGAAAATCGGAGGATTGCAATCGAGATGGGAAGAAGTCCGGGAAGGATAGCTCCAAAGGAAGTGGGATTTTCAGTTTCAAGATGGGGCTTTCGCATCGGATAGTGGAAGCGGAGCTGAATGCCGCTGGATGGCCCCCTTGGCTCACAGCTGCTGCGGGGGAAGCCATTCATGGATGGGTACCCCTCAGGGCAGATTCTTTTGAGAAATTAGAAAAGATTGGACAAGGCACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAGGATGTTTGCTTTGAAGAAGGTGCGGTTTGACAATTTTCAGCCTGAGAGCGTGAGGTTCATGTCTAGAGAAATTACAATTCTTCGCAGGCTTGATCATCCAAACATCATGAAATTGGAGGGGGTTATTACATCCCGACTATCAAGTAGCATATACCTTGTGTTTGAATATATGGAGCATGATCTTGCAGGACTAGTATCCTGTCCTGATATAACGTTCAGTGATTCACAGGTGAAATGTTACATGAGGCAACTGCTGAGTGGACTTGAGCACTGTCACCTACGTGGTATCATCCATCGGGATATTAAAGTATCCAATATATTAGTGAATAATGATGGTATTCTCAAGATAGGCGATTTTGGATTGGCAAATACAATTAGCTCAAGTAACAAGCATCCATTAACCAGTCGTGTAGTGACTCTATGGTACCGCCCTCCTGAACTCTTGATGGGATCAACCAACTATGGAGTATCAGTGGATCTGTGGAGTGTGGGTTGTGTATTTGGGGAACTTTTTCTGGGGAAACCTATCCTCAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTTAAGCTTTGCGGTTCACCGCCTGATGAATTCTGGAAGAAGTGCAAGCTTCCCCATGCAACAATGTTTAAACCTCAGATTACTTACGAAAGCTCTTTATCGGAGAGGTTTCTGGGTATTCCAGAAACTGCTCTAAACCTAATGCAGACTCTATTATCCGTTGATCCCCGTGAGCGTGGGACTGCCTCTTCTGCCCTGATGTCTGAGTATTTCAGCACCAAGCCATTTGCTTGTGATCCATCAAGCCTGCCAAAATATCCACCCAACAAAGAAATGGATGCTAAAAACCGGGAAGAGGTTCGCAGGAAAAAGACTGATGGTAAAGCGCGTGAGGCTGCAACATCAAGAAAGCAAAGACGAGTACGTAAAGTTTTACAGGAACCAAACAATTTCAGTAACCCAGTTTCAACTGATGAAAAACAGAACAATTCTCAAAAAGTTGTTAAAGATGATGTTAAATCATATCTTCACAAGGGAAAAGGAGAAGCTATGCAGAAGGAGCCATCAAAGCCTTCCATAGAAATAATGTCACAAACCTCACAGATCAATGGCGTGCCTCGTGGCTTCAGTATATTAGCAGGACCAGCACCAGCCTCAGGAGCTAGTGGCTTTGCATGGGCAAAAAGAAGAAAACCAGAGGTTTCATCCACATTATCAGATGGTTCAAAAAGCAAAATCAGCGCACTGGATCCAACTTTTGCAAAAGGCACATATAATTTAACCAGACATGTGATCGATGTCGCAGAAAGAAAATTTAAGGGCAATACAGGCCATCAGACTAAGTCTGGTCAGCCGGAACATATTGATGCATCCGATACATATTCAAATTTATCAACGAATTTTGATTCCATGGAAACACCGGATAGTGTGACGGATACTCAGGGCCACGAAAAGCTTGGCCATGAAAGTACATGCCCTGCAGCTGGCAAATCAAGGTTAGGAAGATAA	1929	0.4469	MGCINSKNLVAGDSPVHSKVRTDNGSAIVEPPSRSRSGMLASAGEGDRKSEDCNRDGKKSGKDSSKGSGIFSFKMGLSHRIVEAELNAAGWPPWLTAAAGEAIHGWVPLRADSFEKLEKIGQGTYSSVFRAREVETGRMFALKKVRFDNFQPESVRFMSREITILRRLDHPNIMKLEGVITSRLSSSIYLVFEYMEHDLAGLVSCPDITFSDSQVKCYMRQLLSGLEHCHLRGIIHRDIKVSNILVNNDGILKIGDFGLANTISSSNKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFGELFLGKPILKGRTEVEQLHKIFKLCGSPPDEFWKKCKLPHATMFKPQITYESSLSERFLGIPETALNLMQTLLSVDPRERGTASSALMSEYFSTKPFACDPSSLPKYPPNKEMDAKNREEVRRKKTDGKAREAATSRKQRRVRKVLQEPNNFSNPVSTDEKQNNSQKVVKDDVKSYLHKGKGEAMQKEPSKPSIEIMSQTSQINGVPRGFSILAGPAPASGASGFAWAKRRKPEVSSTLSDGSKSKISALDPTFAKGTYNLTRHVIDVAERKFKGNTGHQTKSGQPEHIDASDTYSNLSTNFDSMETPDSVTDTQGHEKLGHESTCPAAGKSRLGR	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g1848	642	MobiDBLite	consensus disorder prediction	452	469	-	-
	Prci3g1848	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	234	246	IPR008271	GO:0004672\|GO:0006468
	Prci3g1848	642	SUPERFAMILY	Protein kinase-like (PK-like)	107	404	IPR011009	-
	Prci3g1848	642	ProSitePatterns	Protein kinases ATP-binding region signature.	120	143	IPR017441	GO:0005524
	Prci3g1848	642	MobiDBLite	consensus disorder prediction	580	642	-	-
	Prci3g1848	642	ProSiteProfiles	Protein kinase domain profile.	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g1848	642	PANTHER	CELL DIVISION PROTEIN KINASE	112	403	-	-
	Prci3g1848	642	Gene3D	Transferase(Phosphotransferase) domain 1	197	438	-	-
	Prci3g1848	642	MobiDBLite	consensus disorder prediction	45	63	-	-
	Prci3g1848	642	MobiDBLite	consensus disorder prediction	408	475	-	-
	Prci3g1848	642	FunFam	probable serine/threonine-protein kinase At1g54610	101	196	-	-
	Prci3g1848	642	Pfam	Protein kinase domain	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g1848	642	FunFam	probable serine/threonine-protein kinase At1g54610	197	438	-	-
	Prci3g1848	642	MobiDBLite	consensus disorder prediction	417	451	-	-
	Prci3g1848	642	CDD	STKc_CDK9_like	114	398	-	-
	Prci3g1848	642	SMART	serkin_6	114	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g1848	642	MobiDBLite	consensus disorder prediction	1	65	-	-
	Prci3g1848	642	Gene3D	Phosphorylase Kinase; domain 1	101	196	-	-
	Prci3g1848	642	MobiDBLite	consensus disorder prediction	584	617	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g1848	Prci-Chr3	32899124	32905432	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g1848	106	438	Core Cell Cycle Gene Families	AT5G10270	45.115	2.17e-106	329

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Prci3g1848		Pkinase	1.3e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g1848	-		-	qsa:O6P43_004446	820.846