Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1771 ATGGGGAGAGGTAGGGTTCAGTTGAAGCGGATCGAGAACAGTTCGAGCAGGCACGTGACGTTCTCAAAACGCAGAAACGGGCTGCTCAAGAAAGCCAATGAAATCTCAGTGCTCTGCGATGCCCAGGTCGCTTTGATTGTCTTCAGTTGCAGGGGCAAACTTACTGAGTTTTCCTCTCATTCCTCCAGCATGGATAACATTCTGGAGCGATATGAGAGATGTTCGCACTCAGAACAACTTGCTGGAACCAACAGCGATTCCCAGGGAAACTTGTCTTTGGAGCTATTCAAGCTCACTACTAGAGCTGAAGTTTTACAAAAGAACATAAGGAATTATGAAGGAGAGGATTTGGATCCCTTGAGTTTGAAGGAGCTTCAGAGTTTGGAGCACCAGCTCGACAATGCTCTAAAGCGCATCCGAATGAAAAAGAACCAAATCATGATGGAATCCATCTCAGAGCGGCACAAAATGGAAAAGGCGCTGAAGGATCAAAACAACATGCTAGCCAAGAAGGTGAAGGAGAAAGAGAAGAAGGCACTGATAACCCCACCCCAGCAATATCCATTCGACTTCAATGTTTCTCCGCCGCAGCTACCATCACCACCTACTCTAACTCTTGGTGGAACTCGTGAAGAAGGAGGAGCCATGTTGGTGGGGGACAATGAAGCTGAAGCTGAAGCTGGTCCTAGTAACAACATCGTCATGCCACCTTGGATGATGTTTCATATGACTAGTTAG 738 0.4702 MGRGRVQLKRIENSSSRHVTFSKRRNGLLKKANEISVLCDAQVALIVFSCRGKLTEFSSHSSSMDNILERYERCSHSEQLAGTNSDSQGNLSLELFKLTTRAEVLQKNIRNYEGEDLDPLSLKELQSLEHQLDNALKRIRMKKNQIMMESISERHKMEKALKDQNNMLAKKVKEKEKKALITPPQQYPFDFNVSPPQLPSPPTLTLGGTREEGGAMLVGDNEAEAEAGPSNNIVMPPWMMFHMTS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1771 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci3g1771 245 Coils Coil 122 145 - -
Prci3g1771 245 Coils Coil 158 178 - -
Prci3g1771 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci3g1771 245 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Prci3g1771 245 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g1771 245 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Prci3g1771 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Prci3g1771 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci3g1771 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci3g1771 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci3g1771 245 Coils Coil 95 115 - -
Prci3g1771 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g1771 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci3g1771 245 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Prci3g1771 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Prci3g1771 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1771 Prci-Chr3 32114563 32120312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1771 1 234 MADS-box Gene Family AT1G26310 45.455 2.98e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci3g1771 K-box 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1771 K09264 - jre:108988111 257.684