Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1729 ATGCTCAAAGAAGGCAGTGGCAATGGTGTCGCCGGTAATAATAGCTGGGCACGTATCTGTGACACGTGCCGCTCTGCTCCCTGCACTGTATACTGTCGCGCCGACATGGCTTACCTCTGCACCAGCTGCGACGCCCGCATCCACGCCGCCAACTGCGTCGCCTCCCGCCACGAGCGCGTGTGGGTCTGCGAGGCCTGTGAACGCGCCCCCGCTGAGTTTCTCTGCAAAGCCGACGCCGCCTCGCTCTGCTCCGCCTGCGACGCTGACATCCACTCTGCTAACCCCCTCGCCAGCCGTCACCACCGCGTCCCCATTCTCCCCATCTACGGATCTCCTTCCGCGGGGTCTGCTCCTGACGGGGAGGCTGGTTTTCTATCTCAAGAAGGTGAGGAGGCGGAGGAGGAGATTGTTGATGAAGAGGATGAAGACGAGGCTGCCTCATGGTTGTTGCTGAATCCTGTGAAGAACAATAAAAACACCAACGATTCCAACCCCAACAACAACAATCAGAGCAATGGATTTTTGTTCGGTACTGGGGAGGTTGATGAGTATTTGGACCTCATGGATTGCAATTCATGTGCTGAAAACCAGTTGACCGATCATTACAATCAGCGACAACATTATGGTGTTCCTCAGAAGAGCTACGCCGGTGACAGCGTCGTTCCGGTTCAGCTGCAGCAGCAGCAGCATTTTCAGTTGGGTTTGGACTTTGATTCCTCAAAAGCTGCTTACAGTACTTTCAACGGTTCTGCTGCTCAAAATGTTTCGGTTTCGTCAATGGATGTTGGCATTGTACCTGAATCAACCATAACCGATGGCTCGATTTCCCATTCAAGACCTCCGAAAGGGACAATTGACCTATTTTCGGGGCCATCAATTCGGATGCCTTCCCAGCTTAGTCCGATGGACAGGGAGGCTAGGGTGTTAAGATACAGGGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACAATAAGGTATGCCTCTAGGAAGGCTTACGCAGAGACCAGACCTCGTGTCAAAGGTCGATTTGCAAAGAGAACAGAGGTGGAAGCTGAAGTGGACCGGATGTTCTCTACTCCTCTAATGACGGAGACTGGATATGGCATTGTTCCTTCCTTCTGA 1122 0.5258 MLKEGSGNGVAGNNSWARICDTCRSAPCTVYCRADMAYLCTSCDARIHAANCVASRHERVWVCEACERAPAEFLCKADAASLCSACDADIHSANPLASRHHRVPILPIYGSPSAGSAPDGEAGFLSQEGEEAEEEIVDEEDEDEAASWLLLNPVKNNKNTNDSNPNNNNQSNGFLFGTGEVDEYLDLMDCNSCAENQLTDHYNQRQHYGVPQKSYAGDSVVPVQLQQQQHFQLGLDFDSSKAAYSTFNGSAAQNVSVSSMDVGIVPESTITDGSISHSRPPKGTIDLFSGPSIRMPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRVKGRFAKRTEVEAEVDRMFSTPLMTETGYGIVPSF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1729 373 ProSiteProfiles CCT domain profile. 304 346 IPR010402 GO:0005515
Prci3g1729 373 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Prci3g1729 373 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Prci3g1729 373 SMART bboxneu5 15 62 IPR000315 GO:0008270
Prci3g1729 373 SMART bboxneu5 63 105 IPR000315 GO:0008270
Prci3g1729 373 Pfam CCT motif 304 346 IPR010402 GO:0005515
Prci3g1729 373 CDD Bbox1_BBX-like 19 62 - -
Prci3g1729 373 Coils Coil 122 142 - -
Prci3g1729 373 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 361 IPR045281 GO:0009909
Prci3g1729 373 CDD Bbox1_BBX-like 62 105 - -
Prci3g1729 373 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1729 Prci-Chr3 31789742 31791911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1729 1 373 C2C2-CO-like Transcription Factor Family AT3G02380 57.702 3.41e-141 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci3g1729 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1729 K12135 - qsu:112016332 488.804