Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1682 ATGGGTCGCCGGAAGATCAAGATGGAGATGGTGAAGGACGCAGGGTCGAGGTTGGTGACGTTCTCAAAGCGTCGGAACGGGGTCTTCAAGAAAGCGAACGAGCTAGCGATCCTGTGCGGCGCCGAACTCGCCATTGTGGTGTTCTCGCCTGGTGGCAAACCCTTCTCCTTCGGCCATCCTTCCGTCGATGTGGTTACTCAGAGGTTTCTCCGGCACCTCGAAGAGGAAGACGACGATGAGGAGGAGGCCAAATATCCGGCAGGTGGTATGTCTTCCTCGAAGAAAGCTTCTCGAAAAGCGGAGAAACTGAACCAGAGGCTAATGAATCTGACGAAGCAGCTGGAGGAGGAGAAGAAGAAAGGCGAGATGCTGGACAAGGCGATCGAGGAGAAGAAGTTCAAGTGTGGCCTCGGGCCTGAAACCAGTCCTGATGATCTGAGCAAGCTCGAGCGATTGAGGCAAACGCTGGAGAAACTCAGGGATAACGTGAAGTTACGCAAGACAGAAATGGAGGCTGCGTCGTCTTTGCTTCAACTTGCAGAGGAGTTACAGTTGGAGGAAGACGATGATGTTGCAGAAAGTGATTCGCATGACGGCAAGACCAGAAATGGAAACTCAAAAATTTAA 627 0.5231 MGRRKIKMEMVKDAGSRLVTFSKRRNGVFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVDVVTQRFLRHLEEEDDDEEEAKYPAGGMSSSKKASRKAEKLNQRLMNLTKQLEEEKKKGEMLDKAIEEKKFKCGLGPETSPDDLSKLERLRQTLEKLRDNVKLRKTEMEAASSLLQLAEELQLEEDDDVAESDSHDGKTRNGNSKI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1682 208 MobiDBLite consensus disorder prediction 194 208 - -
Prci3g1682 208 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Prci3g1682 208 PANTHER MADS BOX PROTEIN 3 165 - -
Prci3g1682 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Prci3g1682 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci3g1682 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci3g1682 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci3g1682 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci3g1682 208 Coils Coil 146 173 - -
Prci3g1682 208 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Prci3g1682 208 MobiDBLite consensus disorder prediction 75 98 - -
Prci3g1682 208 Coils Coil 93 127 - -
Prci3g1682 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci3g1682 208 MobiDBLite consensus disorder prediction 184 208 - -
Prci3g1682 208 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1682 Prci-Chr3 31172589 31173215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1682 1 180 Type I MADS-box Gene Family AT2G34440 42.077 9.12e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci3g1682 SRF-TF 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1682 - - pcin:129305499 366.696