Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1613 ATGAAGCAGTCTTTTGACATTTCAGCTTCTGGTCCAACCAAGATTCCATCTATAAATATTCCTAAAGAAGTGGGACGCAACGCTTGGGAGGTCTTATCTGGATCTGATGCCTACCATGCCTCATCGGATGCTAGCCTTTTTTCTAGCTCATTACCTGTTTTGCCACATGAAAAGTTGAACTTGAATGACACTGAAAATGAGTATCAGTCTGTGGATGTGGATGACATCTCATCTGGCTTTAACAAGCTCCACCAAGATTTAGAGGTCAGTGAATCACTTGGAGGTCCAAATATTCATACACTTGGAACAATGCTTCCAGATGATGAGGAGGAGCTTTTAGCTGGCTTAACAGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTCGGTAGTTGTGGAGGTATGGAACTGGAAACTGACCCACAAGAAAGTCTTACAGTGGGCATTTCAAAATTAAGTTTCTCTGATAGTACAATTGGCAATGGTTTGCCCCATTTTTCTTTTCCTAACGGTGTTGGAACTGTTGCTGGGGAACATCCGTATGGGGAGCATCCTTCTAGAACATTATTTGTTCGAAATATTAATAGTAACGTGGAGGATTCAGAATTGAGAGCCCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAGCATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAATAAACCGCTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAATCAAGGAACTTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCACCATAAATTTGTTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTGAACAGGAGTGATATAGCAGGTAAACGCATAAAGCTGGAACCTAGTCGTCCGGGTGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGATCTTGATCAAGATGAATCTCGAAATTTCCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAACAGCTCCATTGAACTTAAGCCAATGCAATCTATCAGTAATTCTCCTGGTTCTAGGATCATGAGCCCAACAACTGGCAGCCATTTGCCAGGATTAGCTTCAATCTTGCAACCGCAAGGATCTAACTCTATAAAGGGTGCAGCCATTGGCAAGGACCTAGGAAGGAGTAGTCATGGAGATCACATGTTTAATAGTACCAATTCATCACATGGAGCCACATTTCAATCTCACTCACTTCCAGAGCCATCATTCAGCCAATATCATGGAGCTTTGTCCCCTTTTGGCCCATCAAGTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGTAATTCGAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGCCTAGACCATCTGTAGGGCCCCCATTCACATCGAATGGAAAGAGTCACGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCCCAGCATCATCTTCACCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGACGCTTTGGTTTTCTTCCTGAATCACCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATATGGGACACAGTGATGGAAACTACATGGTTAACATGGGTGGATCTGTTAATGCTGGCATTACTATAGCAAGGAATATGTCTGAAAATGTGCAATCAAACTTTAGAATGAGATCCTCTCCGAGGCTTAGCCCTGTGTTTCTGGGTAATGGTCCTTACTCAGGGCTTCCACCCACTGCCTTGGACGGTTTGACTGATCGTGGGAGGAGTAGACGGCTAGAGAACAATGGTAACCAAGTTGATAGCAAGAAGCAATTTTTGCTCGACTTGGATAAGATAAAAAGTGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCTGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTTTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGCTATGCATTTATCAACATGCTATCACCCTCTCTTATCATTCCATTCTCTGAGACATTCAATGGAAAGAAGTGGGAGAAGTTTAATAGCGAGAAAGTTGCTTCTTTGGCATACGCTCGAATCCAAGGAAAGGCTGCCCTTGTGAGCCACTTTCAGAATTCAAGTTTGATGAATGAAGACAAGCGGTGCCGCCCTATTCTCTTCCACTCTGAGGGTCCTGAAGCTGGGGATCAGATCGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAGCTCTTCAGGTCAACTGATTCACATTTGAATGACTCTCCTGGAAGCCCCCACCAGGATAAGCCTCCTGTGAACTTGGAGACAACTTAA 2586 0.4304 MKQSFDISASGPTKIPSINIPKEVGRNAWEVLSGSDAYHASSDASLFSSSLPVLPHEKLNLNDTENEYQSVDVDDISSGFNKLHQDLEVSESLGGPNIHTLGTMLPDDEEELLAGLTDDFDLSGLPGSLEDLEDYDLFGSCGGMELETDPQESLTVGISKLSFSDSTIGNGLPHFSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESRNFRHQVGSPVANSPPGNWLQFNSSIELKPMQSISNSPGSRIMSPTTGSHLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDHMFNSTNSSHGATFQSHSLPEPSFSQYHGALSPFGPSSSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRPSVGPPFTSNGKSHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESPETSFMNHVGYGGINMGHSDGNYMVNMGGSVNAGITIARNMSENVQSNFRMRSSPRLSPVFLGNGPYSGLPPTALDGLTDRGRSRRLENNGNQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFSETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQLFRSTDSHLNDSPGSPHQDKPPVNLETT 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1613 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Prci3g1613 861 MobiDBLite consensus disorder prediction 519 547 - -
Prci3g1613 861 MobiDBLite consensus disorder prediction 654 674 - -
Prci3g1613 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Prci3g1613 861 Gene3D - 185 279 IPR012677 -
Prci3g1613 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 120 815 - -
Prci3g1613 861 CDD RRM1_MEI2_like 195 271 IPR034453 -
Prci3g1613 861 Pfam RNA recognition motif 2 697 793 IPR007201 -
Prci3g1613 861 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
Prci3g1613 861 SMART rrm1_1 699 775 IPR000504 GO:0003723
Prci3g1613 861 SMART rrm1_1 197 265 IPR000504 GO:0003723
Prci3g1613 861 SMART rrm1_1 282 350 IPR000504 GO:0003723
Prci3g1613 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Prci3g1613 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Prci3g1613 861 Gene3D - 280 377 IPR012677 -
Prci3g1613 861 MobiDBLite consensus disorder prediction 838 861 - -
Prci3g1613 861 FunFam Protein MEI2-like 1 280 375 - -
Prci3g1613 861 CDD RRM3_MEI2_like 700 785 IPR034454 -
Prci3g1613 861 MobiDBLite consensus disorder prediction 533 547 - -
Prci3g1613 861 CDD RRM2_MEI2_like 280 350 - -
Prci3g1613 861 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Prci3g1613 861 FunFam MEI2-like protein 5 isoform 2 185 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1613 Prci-Chr3 27319135 27328093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1613 191 359 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 2.97e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1613 - - gmx:100800877 1415.21