Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1568 ATGGATTTCCAAAGCCAGCAATCCATGTCAGTTTCACCCCAGAGGAAGACGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTCACCTTCTGCAAACGCAGAAATGGACTGCTCAAGAAGGCTTATGAACTATCTGTGCTCTGTGATGCAGAAGTTGCTCTAATCGTCTTCTCTAGCCGAGGTCGTCTCTATGAATATGCTAATAACAGTGTTAAAGCAACTATTGAGAGGTACTGGAAAGCTTGTTCAGATTCTACTAGTGGATCTACTTTTGAGGTTAATGCTCAGTACTACCAACAAGAATCTGCCAAACTGCGTGCCCAAATCAGTAACCTGCAAAATCACAACAGGCAAATGATGGGAGAGGGTTTAGGCAATCTAAACTCCAAGGATCTCAAAAACCTGGAGGGTAGGTTAGAAAGAGGGATCAGCAGAATCCGTTCCAAAAAGAATGAGCTTCTATTTGCAGAAATTGAATACATGCAGAAGAGGGAAATAGACTTGCATAACAACAACCAGATTCTTCGAGCTAAGATAGCTGAAAGTGAGGGGAACCAGCAGCAAGACATGAATGTAATGGGAGCAGGAGGGTCCGACTATGAATGTATGCAATCTCAGCAGCAATTTGACAATCGAGGTTACTTCCAAGTCACTGCGTTACAACCCGATCATCAGCATCCACGCCAGGATCACATGGCCCTTCAATTGGTTTGA 735 0.4408 MDFQSQQSMSVSPQRKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYWKACSDSTSGSTFEVNAQYYQQESAKLRAQISNLQNHNRQMMGEGLGNLNSKDLKNLEGRLERGISRIRSKKNELLFAEIEYMQKREIDLHNNNQILRAKIAESEGNQQQDMNVMGAGGSDYECMQSQQQFDNRGYFQVTALQPDHQHPRQDHMALQLV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1568 244 MobiDBLite consensus disorder prediction 1 15 - -
Prci3g1568 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Prci3g1568 244 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Prci3g1568 244 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Prci3g1568 244 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Prci3g1568 244 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Prci3g1568 244 SUPERFAMILY SRF-like 18 104 IPR036879 GO:0003677|GO:0046983
Prci3g1568 244 Pfam K-box region 101 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g1568 244 MobiDBLite consensus disorder prediction 1 21 - -
Prci3g1568 244 Coils Coil 139 159 - -
Prci3g1568 244 Coils Coil 102 129 - -
Prci3g1568 244 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Prci3g1568 244 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Prci3g1568 244 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g1568 244 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Prci3g1568 244 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Prci3g1568 244 FunFam agamous-like MADS-box protein AGL11 29 111 - -
Prci3g1568 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1568 Prci-Chr3 25569389 25594019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1568 15 244 MADS-box Gene Family AT3G58780 66.525 6.16e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci3g1568 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1568 K09264 - qsu:112006550 369.392