Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1547 ATGGATGAACCTCAGGGCAGTTCTAGCACTCTGCCTCCTTTCCTGACGAAGACTTATGAGATGGTGGATGATCGTTCCTCAGATTCGATTGTTTCCTGGAGTGCCACTAACAGAAGTTTCATAGTATGGAATCCGCCAGAATTTGCAAGTGAGTTGCTACCAAGATTCTTTAAGCACAATAACTTCTCTAGTTTCATCAGACAGCTCAACACATATGGTTTTAGAAAAGTTGATCCAGAACAATGGGAATTTGCAAATGATGATTTCATAAGAGGTCAACCGCATCTTTTGAAGAATATACATAGACGAAAGCCAGTTCACAGCCATTCTTTACAGAGTCTCCAAGGACAAGGAAGCGCTCCATTAACAGAATCAGAAAGACAGAGTTTGAGAGGCAAAATAGAGAGGCTGAAACATGAAAACGAACAACTTTGTCTTGAGTTAGAGAAACATGAACAGGAGTGGCAAGTAAATGAGATTAAAATAGGATGCTCAAAGGAGAGATTGGAAAAGTTGGGAAGGAAGCAACAAAAGATGCTCTCTTCTGTTTCTAAAGTGTTGCAGAAACCTGGAACTGCCTCAAATCTCTTGCAATTGTCAGAATCCCTGTATAGAAAACGAAGGTTGCCAAGAGGTGGTTACTTTCGTGATGAAGCTGTCATCGAAGACGCTACTGAAACTTCGTCTGTGATACCAAGAGATAATGCAGATATAACTTCTGTTCTGTCATCAACTGTGGAGAGACTGGAACAGCTGGAGTCATTACTGCTATTTTGGGAGAACATTGCTCATGATTTTAGTGATTCCTTTGTTCATAGCCATTCAAATATGAATCTCGATGAATCTACAAGTTGTGTTGATAGTCCTGCTATCTCTTGTATGCAACCTGATGACGAACTTCACCCTACATCACCTGGAATTGACATGAACTCTGAGCCAGCTGGAGCTACTGTTTCTGATCCTGCTTCATCAAAAGAAAAACCTGTGGGAACAACCACTATAGCAGCAGGCGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGAATCCTGGTTCCTCAGAAACACAGGAAGTACAGTCAGAACGAAAAGATTCTGATAGCAGAAAAAATGAAGGAAAAACTAGTGACCGGACTAAACTTTGGTGGAGTGTGAGCGATGTAAATAACCTTTCAGAACAGATGGGGCATCTTAGTCAAACAGAGAAAACTTAA 1215 0.4091 MDEPQGSSSTLPPFLTKTYEMVDDRSSDSIVSWSATNRSFIVWNPPEFASELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQPHLLKNIHRRKPVHSHSLQSLQGQGSAPLTESERQSLRGKIERLKHENEQLCLELEKHEQEWQVNEIKIGCSKERLEKLGRKQQKMLSSVSKVLQKPGTASNLLQLSESLYRKRRLPRGGYFRDEAVIEDATETSSVIPRDNADITSVLSSTVERLEQLESLLLFWENIAHDFSDSFVHSHSNMNLDESTSCVDSPAISCMQPDDELHPTSPGIDMNSEPAGATVSDPASSKEKPVGTTTIAAGVNDVFWEQFLTENPGSSETQEVQSERKDSDSRKNEGKTSDRTKLWWSVSDVNNLSEQMGHLSQTEKT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1547 404 Coils Coil 399 404 - -
Prci3g1547 404 MobiDBLite consensus disorder prediction 348 404 - -
Prci3g1547 404 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g1547 404 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g1547 404 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Prci3g1547 404 Coils Coil 127 154 - -
Prci3g1547 404 MobiDBLite consensus disorder prediction 107 128 - -
Prci3g1547 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 264 IPR027725 -
Prci3g1547 404 FunFam Heat shock transcription factor 1 7 104 - -
Prci3g1547 404 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g1547 404 Gene3D - 6 104 IPR036388 -
Prci3g1547 404 MobiDBLite consensus disorder prediction 290 330 - -
Prci3g1547 404 MobiDBLite consensus disorder prediction 358 377 - -
Prci3g1547 404 MobiDBLite consensus disorder prediction 109 126 - -
Prci3g1547 404 MobiDBLite consensus disorder prediction 378 404 - -
Prci3g1547 404 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g1547 404 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g1547 404 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1547 Prci-Chr3 25337287 25339884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1547 7 404 HSF AT4G18880 52.956 1.01e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci3g1547 HSF_DNA-bind 1.3e-31 CL0123