Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1545 ATGGCTTCGGGGGCTATATTTTCGTCCCTGCGGCGGCGGAGGTCGCCGTCATTGGAAGCCTTTCTTGCTCCGGTTGACCTGACGGATGTTGCCTTGGTCCAAACTCTCGTGTCCGTCGCTAGTGGGCTCGTCTCTTGCTTCTCTGGGCGTTCGTTCTTCTTCCAGCGCAAGAATTCGCGGGCGCTTATTCGAAAAGTCGAGGTGCTTCACTTGCTTTTAGAGTATTTGCGAGATAACGGAACGAATATTCCGATGGCAGGGTCAGTTTGTCTTAAGGAGCTTTATCTTCTTCTGTATCGGTCGAAGATTCTATTTGATTATTGCGCGCAGTCGAGTAAGTTATGGTTTTTGCTTCAGAACCATTCAATTTCTGGTCATTTCCACGATTTGAATAAAGAAATATCGACTCTTTTGGATGTATTCCCCATTAAGGATGTTCAATTGAGTGATGATATTAGGGAACAGATTGAGTTGTTGCAGAAACAATCACGAAGAGCTAAGTTGTTTATTGACAAAAATGATGATGAGCTCCGGACTGAGTTCTTGTCGTATCTCGATGAATTTGAGAATGGGCGAGTCCCTGATTCAGCTCAGCTTCGATCTTTTTTTATGATGAAATTGCAGATTCTGCATCCTAGGAGTTGTAGAACAGAAATTGAGTCGTTGGAGGAGCAAATTATTAACCACGAAGGAGATGTTGAGCTAACAGTTACTGTGCTTAATGGTTTGGTTGCATTGACTCGGTATTCCAGATTTTTGCTCTTCGGATTTGAGGAAGATGAAATAGAGTTAGAAAATAGGAACCAGATAAAAAAACTGAAGAGATTGATTACTCAAGAAATTGCTGAAACATTTGTAACCATTCCTAAGGATTTTTATTGCCCAATATCGTTGGATTTGATGAAAGACCCAGTGATAATCTCCACTGGACAAACATATGATAGGAGCTCCATATCCAGGTGGTTGGAAGAAGGGCATTGTACTTGTCCAAAGACAGGGCAAATGCTTGCCCACACAAAGCTTGTCCCTAATCGAGCTCTGAAGAATTTGATCTTGAAGTTCTGCACTGCACATGGAATCCCTCCTGACCCATCAGAGGTGGTAGATGTAGTTCCAGATACCTTTTCAATGGCTTCTCCCTCGAAAGCGGCCCTTGAAGCCAACCAAGCAACAACAATGCTCCTCATTCTGCATCTGGAGAAGGGATCACAAACTGCACAGACCATAGCTGCCCGGGAGATACGACTACTTTCAAAAACAGGCAAAGAAAATCGTGCATTTATCGCAGAAGCTGGGGCGATTCCTTGCCTTCGTAAACTACTTTCATCTCCTAATGCTGTTGCTCAGGAGAATTCAGTGACTGCATTGCTCAACCTGTCAATATACGAGAAGAACAAGAGCCGGATCATTGATGAGGAAGGTTGTCTGGAATCCATAATTGATGTGCTGAGATTAGGCCACACAACAGAGGCCAGGGAGAATGCTGCCGCAACCTTGTTCAGCCTCTCAGCAGTCCACGGATACAAGAAGAGAATTGCAGATAAGGCATGGGCAATTGAAGCCCTTGCACAGCTTTTGCAAGAGGGTAACTTAAGAGGAAAGAAGGATGCAGTAACAGCTTTATTCAATCTTTCCACCCATACTGATAACTGTGTCAGAATGGTTGAAGCCGGAGCAATAACAGCTCTAGTTGGTGCTCTGGGGACTGACGGAGTGGCTGAGGAAGCAGCAGGTTCCCTTGCCTTGATCGTCCGGCAACCTATCGGGGCCAAGGCAGTGGTGAAGGAGGAAGAAGCAGTGTCTGGACTGATGGGAATGATGCGTTGTGGAACCGCACGGGGGAAAGAGAATGCTGTGGCAGCATTGTTGGAGCTATGCCGGAGTGGAGGTGCAGCAGCAACAGAGAAGGTGGTGAGGGTGCCGGCTTTGGCTGGCTTACTCCAAACCCTGCTTTTTACAGGAACAAAGAGAGCTAGAAGGAAAGCAGCCTCACTTGCTAGAGTGTTTCATAGATGTGAAGATGCAGCTTTACATTATGGTGGACTAGGTGTAGGATATGCATATGCTGGCAATTCAGCTACTAGCAGAGATACAACCTTTGTGGGGGATGTTTCAGTACCAATGTCCATGTCTGTCCCTGTCCTGTAG 2148 0.4586 MASGAIFSSLRRRRSPSLEAFLAPVDLTDVALVQTLVSVASGLVSCFSGRSFFFQRKNSRALIRKVEVLHLLLEYLRDNGTNIPMAGSVCLKELYLLLYRSKILFDYCAQSSKLWFLLQNHSISGHFHDLNKEISTLLDVFPIKDVQLSDDIREQIELLQKQSRRAKLFIDKNDDELRTEFLSYLDEFENGRVPDSAQLRSFFMMKLQILHPRSCRTEIESLEEQIINHEGDVELTVTVLNGLVALTRYSRFLLFGFEEDEIELENRNQIKKLKRLITQEIAETFVTIPKDFYCPISLDLMKDPVIISTGQTYDRSSISRWLEEGHCTCPKTGQMLAHTKLVPNRALKNLILKFCTAHGIPPDPSEVVDVVPDTFSMASPSKAALEANQATTMLLILHLEKGSQTAQTIAAREIRLLSKTGKENRAFIAEAGAIPCLRKLLSSPNAVAQENSVTALLNLSIYEKNKSRIIDEEGCLESIIDVLRLGHTTEARENAAATLFSLSAVHGYKKRIADKAWAIEALAQLLQEGNLRGKKDAVTALFNLSTHTDNCVRMVEAGAITALVGALGTDGVAEEAAGSLALIVRQPIGAKAVVKEEEAVSGLMGMMRCGTARGKENAVAALLELCRSGGAAATEKVVRVPALAGLLQTLLFTGTKRARRKAASLARVFHRCEDAALHYGGLGVGYAYAGNSATSRDTTFVGDVSVPMSMSVPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1545 715 SMART arm_5 462 504 IPR000225 GO:0005515
Prci3g1545 715 SMART arm_5 421 461 IPR000225 GO:0005515
Prci3g1545 715 SMART arm_5 505 546 IPR000225 GO:0005515
Prci3g1545 715 SMART arm_5 547 585 IPR000225 GO:0005515
Prci3g1545 715 FunFam RING-type E3 ubiquitin transferase 488 673 - -
Prci3g1545 715 SUPERFAMILY RING/U-box 276 360 - -
Prci3g1545 715 Gene3D - 514 671 IPR011989 -
Prci3g1545 715 PANTHER U BOX DOMAIN-CONTAINING 56 670 - -
Prci3g1545 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 360 IPR013083 -
Prci3g1545 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Prci3g1545 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Prci3g1545 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Prci3g1545 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Prci3g1545 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Prci3g1545 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Prci3g1545 715 Gene3D - 373 513 IPR011989 -
Prci3g1545 715 SUPERFAMILY ARM repeat 397 674 IPR016024 -
Prci3g1545 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1545 Prci-Chr3 25326771 25329672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1545 1 715 U-box Gene Family AT1G29340 67.302 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1545 - - gmx:100811153 1068.53