Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1527 ATGAAAACACCAATCAGTAACGAAAGATCGAAGAAGAAGTTATCGTCCAGAGGCCACCAAAAGTTCGTTGGTGTTCGTCAGAGACCTTCGGGAAGATGGGTAGCCGAGATCAAAGACTCGCTTCAGAAGGTCAGGCTATGGCTCGGAACATTCGACACTGCAGAAGATGCAGCTCGAGCCTACGACGCCGCGGCTCGCGGGTTGCGTGGTGCAAATGCTCGCACCAACTTTGAACTGCCGGGTCAATCTGTTGCAGCCTCCGGCGGCTGTTTTAGGTACCCGCCGGAGAACATGGAGCCCTTTTCGTTCGAGGACGTGCCTGAGGCTGGTGCTGAAGCAGACGGACTTCTTGGCGCTCTCAGGGCCAAACTGTCTGATGATAAGAGAAAGGCATCATCTTCGAAGCCTTCCTCCATTGTTGGCTCTGGTGCAGTTTCGACCTCAACTACTCGTAAGCATTCTGGGAGTACAGATACATCAATACCCACGAATCCCGCAAATGCTAAGAGATCAGTGATTGTTTCAGAACCTGTAGATCCTGGAATCACGACCATGGTAAGCTTGGGTTGGTCCAACGATGCAGCATTATACGGACTGCCATGGCAGTCACAGACGACGTATCAGGATTCTGAAAGCGGCTTGCTTTCTGATGCTGTTCGTGGAGTCACGGCTGCGTGGCCTCTTTCTGACCTGACAAACCTGACATGTTCAGATCATTGTTTATCCAACAGTGATAAGAATGGTCAAACGAATTTGGTGAACTTGCAGGTGAATCAAATTGGTGGAATATCGTCGTATGATCATTGCTTCTGGACACCTGAGCAACTACAGTTCGTGCACAGTGACAACAATAACAGTTGGTTTACCTCAGGTGGCTCTTGGGATCCTCTGACTCTGTTTCTTCTGAGCTCGGTTGACATTTAG 924 0.4989 MKTPISNERSKKKLSSRGHQKFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDAAARGLRGANARTNFELPGQSVAASGGCFRYPPENMEPFSFEDVPEAGAEADGLLGALRAKLSDDKRKASSSKPSSIVGSGAVSTSTTRKHSGSTDTSIPTNPANAKRSVIVSEPVDPGITTMVSLGWSNDAALYGLPWQSQTTYQDSESGLLSDAVRGVTAAWPLSDLTNLTCSDHCLSNSDKNGQTNLVNLQVNQIGGISSYDHCFWTPEQLQFVHSDNNNSWFTSGGSWDPLTLFLLSSVDI 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1527 307 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Prci3g1527 307 MobiDBLite consensus disorder prediction 127 165 - -
Prci3g1527 307 MobiDBLite consensus disorder prediction 134 165 - -
Prci3g1527 307 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Prci3g1527 307 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Prci3g1527 307 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Prci3g1527 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 163 - -
Prci3g1527 307 MobiDBLite consensus disorder prediction 1 25 - -
Prci3g1527 307 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Prci3g1527 307 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Prci3g1527 307 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Prci3g1527 307 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
Prci3g1527 307 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1527 Prci-Chr3 25075009 25075932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1527 9 77 AP2-EREBP Transcription Factor Family AT5G19790 70.000 2.17e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci3g1527 AP2 3.4e-13 CL0081