Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1517 ATGGATCAGGCAAGAAAGCCAGAAAGCGACGAGTTATCGGATCTCGTTGATGAAGGGACGGGAAAGAAAACTAGTCATTCGGTTGAAGGGTCCGCTGATGCAGTAGCTGGGGGCAGCTTGAGTGGAGCTATCAAAAGTGGAGATGTGACTTCAGAAGGCATGGGTAATGATAAGGAACTAAAGGAGGCGCCTGCAGAAGCTATGGATCAGGGCATGCGTGATCAGCAAAATAACAGCGACACATTCCACGCCGTTGATCAAGGAACAAGTTATAATTCAAGGAATTTCCTTAATAGCCCTGTTCTTGAGACCGTGGTTGTAATAGATTCTGCTGAGACCGAGTTTGTGAATGGAGACAATAGGAAGTCGGAGGCAAAGATCAATGAATCGGGGCAGATCAAGGCATCCATGAAATCACCAAAAAGGCCGTCTGAAGCGGATAAAAATTCATGTGTGATCAATATAAAGTCTGGTAGCTGCGGAGAGTTTAGCGAGAATGTGGAGGGTGAAAGAATTTGTAGGATTTGCCATCTGTCTTCCGGGCAGCCATCAGATTCAACAGCTGCTAGCCCTACAAACAGCACCCCTACTGGAGATTTAATTCAGCTTGGCTGTGCGTGTAAAGATGAGCTGGGTATTGCGCACAGTCATTGTGCTGAGGCATGGTTCAAGCTAAAAGGAAACAGATTGTGTGAAATATGTGGTGAAACTGCCAAAAATGTTTCGGGTGTTGCTGATCATGGGTTTATGGAAGAGTGGAATGAGAGAACATTCATTGACAACCGGAGCACCTCCTCATCTGGCATGTGCTGCGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCGTGCCTGGTAATTGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA 909 0.462 MDQARKPESDELSDLVDEGTGKKTSHSVEGSADAVAGGSLSGAIKSGDVTSEGMGNDKELKEAPAEAMDQGMRDQQNNSDTFHAVDQGTSYNSRNFLNSPVLETVVVIDSAETEFVNGDNRKSEAKINESGQIKASMKSPKRPSEADKNSCVINIKSGSCGEFSENVEGERICRICHLSSGQPSDSTAASPTNSTPTGDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVADHGFMEEWNERTFIDNRSTSSSGMCCGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1517 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 245 IPR013083 -
Prci3g1517 302 ProSiteProfiles Zinc finger RING-CH-type profile. 165 241 IPR011016 GO:0008270
Prci3g1517 302 MobiDBLite consensus disorder prediction 71 86 - -
Prci3g1517 302 MobiDBLite consensus disorder prediction 1 86 - -
Prci3g1517 302 PANTHER ZINC FINGER, RING-CH-TYPE 62 302 - -
Prci3g1517 302 SMART ringv_2 172 235 IPR011016 GO:0008270
Prci3g1517 302 MobiDBLite consensus disorder prediction 120 147 - -
Prci3g1517 302 MobiDBLite consensus disorder prediction 52 68 - -
Prci3g1517 302 Pfam RING-variant domain 173 234 IPR011016 GO:0008270
Prci3g1517 302 MobiDBLite consensus disorder prediction 1 24 - -
Prci3g1517 302 SUPERFAMILY RING/U-box 169 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1517 Prci-Chr3 24957445 24962578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1517 100 301 C3H Transcription Factor Family AT5G05830 37.799 2.26e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1517 - - gmx:100791129 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g1517 3 24957445 24962578 Prci3g1517 3 24957445 24962578 ECH